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Anopheles gambiae
cluster # 3126 cluster # 3126       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3126#0 length = 874 sequences # 1  
consensus_3126#1 length = 388 sequences # 1  

consensusID : consensus_3126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 874
fasta sequence
                              [GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGTTTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTAAAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTATGTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCAGCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTGGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGAAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATTCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCTTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG]

[+] EMBL BX467617             [GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGTTTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTAAAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTATGTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCAGCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTGGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGAAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATTCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCTTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG]


>consensus_3126#0 GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGT TTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTA AAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTAT GTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCA GCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACAC CACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATAC AATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTT ATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGA GTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATG TTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGG TGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTG GAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGA AAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATT CCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCT TTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG



consensusID : consensus_3126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTT]

[+] EMBL AL934929             [GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTT]


>consensus_3126#1 GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGA ATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATT ATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAA TGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTA TGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTG GATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAA ATGTGGCGTGATAAGAATGGTGGGGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3126#0      GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGT 60
consensus_3126#1      ------------------------------------------------------------
                                                                                  

consensus_3126#0      TTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTA 120
consensus_3126#1      ------------------------------------------------------------
                                                                                  

consensus_3126#0      AAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTAT 180
consensus_3126#1      ------------------------------------------------------------
                                                                                  

consensus_3126#0      GTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCA 240
consensus_3126#1      ----------------------------------------GATCGCCGAGGGGAAAAGCA 20
                                                               * *  **  **  ******

consensus_3126#0      GCAATTTGCAGCGTCACTGTTG-TAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACA 299
consensus_3126#1      GCA-TTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACA 79
                      *** ****************** *************************************

consensus_3126#0      CCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATA 359
consensus_3126#1      CCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATA 139
                      ************************************************************

consensus_3126#0      CAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGT 419
consensus_3126#1      CAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGT 199
                      ************************************************************

consensus_3126#0      TATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGG 479
consensus_3126#1      TATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGG 259
                      ************************************************************

consensus_3126#0      AGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAAT 539
consensus_3126#1      AGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAAT 319
                      ************************************************************

consensus_3126#0      GTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATG 599
consensus_3126#1      GTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATG 379
                      ************************************************************

consensus_3126#0      GTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATT 659
consensus_3126#1      GTGGGGTTT--------------------------------------------------- 388
                      *********                                                   

consensus_3126#0      GGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTG 719
consensus_3126#1      ------------------------------------------------------------
                                                                                  

consensus_3126#0      AAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACAT 779
consensus_3126#1      ------------------------------------------------------------
                                                                                  

consensus_3126#0      TCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGC 839
consensus_3126#1      ------------------------------------------------------------
                                                                                  

consensus_3126#0      TTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG 874
consensus_3126#1      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)