These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence [GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGTTTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTAAAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTATGTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCAGCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTGGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGAAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATTCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCTTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG] [+] EMBL BX467617 [GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGTTTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTAAAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTATGTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCAGCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTGGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGAAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATTCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCTTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG] consensusID : consensus_3126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTT] [+] EMBL AL934929 [GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3126#0 GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGT 60 consensus_3126#1 ------------------------------------------------------------ consensus_3126#0 TTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTA 120 consensus_3126#1 ------------------------------------------------------------ consensus_3126#0 AAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTAT 180 consensus_3126#1 ------------------------------------------------------------ consensus_3126#0 GTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCA 240 consensus_3126#1 ----------------------------------------GATCGCCGAGGGGAAAAGCA 20 * * ** ** ****** consensus_3126#0 GCAATTTGCAGCGTCACTGTTG-TAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACA 299 consensus_3126#1 GCA-TTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACA 79 *** ****************** ************************************* consensus_3126#0 CCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATA 359 consensus_3126#1 CCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATA 139 ************************************************************ consensus_3126#0 CAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGT 419 consensus_3126#1 CAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGT 199 ************************************************************ consensus_3126#0 TATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGG 479 consensus_3126#1 TATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGG 259 ************************************************************ consensus_3126#0 AGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAAT 539 consensus_3126#1 AGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAAT 319 ************************************************************ consensus_3126#0 GTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATG 599 consensus_3126#1 GTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATG 379 ************************************************************ consensus_3126#0 GTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATT 659 consensus_3126#1 GTGGGGTTT--------------------------------------------------- 388 ********* consensus_3126#0 GGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTG 719 consensus_3126#1 ------------------------------------------------------------ consensus_3126#0 AAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACAT 779 consensus_3126#1 ------------------------------------------------------------ consensus_3126#0 TCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGC 839 consensus_3126#1 ------------------------------------------------------------ consensus_3126#0 TTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG 874 consensus_3126#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||