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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence
[GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGTTTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTAAAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTATGTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCAGCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTGGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGAAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATTCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCTTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG]
[+] EMBL BX467617 [GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGTTTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTAAAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTATGTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCAGCAATTTGCAGCGTCACTGTTGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATTGGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTGAAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACATTCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGCTTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG]
consensusID : consensus_3126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTT]
[+] EMBL AL934929 [GATCGCCGAGGGGAAAAGCAGCATTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACACCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATACAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGTTATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGGAGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAATGTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATGGTGGGGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3126#0 GGCAGATCGNGCACGAGGAGTAATACTCGTGATAATTTATAAAATTCGGCAATTCAAAGT 60
consensus_3126#1 ------------------------------------------------------------
consensus_3126#0 TTGTCTCAGAAGTGTCTGGGTGTGGCTTAAAATAATGTGAAATACAAAAAAAAGCATTTA 120
consensus_3126#1 ------------------------------------------------------------
consensus_3126#0 AAAAAGACGTGAAAAACAAATAAAAAAAAATCCTATTCATATTGCACACACTGTGAGTAT 180
consensus_3126#1 ------------------------------------------------------------
consensus_3126#0 GTTATCATACCAGACATCAAGCGACTGCTATTGCACGTCCAAGCTGCGTTGGAGAAAGCA 240
consensus_3126#1 ----------------------------------------GATCGCCGAGGGGAAAAGCA 20
* * ** ** ******
consensus_3126#0 GCAATTTGCAGCGTCACTGTTG-TAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACA 299
consensus_3126#1 GCA-TTTGCAGCGTCACTGTTGGTAGTAGTCCCGTTTAAGAATATTGTCTGCCCTCCACA 79
*** ****************** *************************************
consensus_3126#0 CCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATA 359
consensus_3126#1 CCACTACCACCACCATCATCATCATCATCGTCATCATCATTATCATCATCATCTTCGATA 139
************************************************************
consensus_3126#0 CAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGT 419
consensus_3126#1 CAATGGATCGGCTTGATGCAGCGCGTCCATTGCCAGCGTAATGCCATGTACAAAGCAAGT 199
************************************************************
consensus_3126#0 TATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGG 479
consensus_3126#1 TATGCAATGAAACGGATACGTAAATTCGCATTAAAACATTATGCAAATATTCTCGCATGG 259
************************************************************
consensus_3126#0 AGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAAT 539
consensus_3126#1 AGTTTCTACTTGTTGCGAAGAGAGAAGTAGTAGCAAAGCTGGATGGATGGACGTTACAAT 319
************************************************************
consensus_3126#0 GTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATG 599
consensus_3126#1 GTTATAGTGATATAAATCATACATTAATTGGACGTTTGCAAATGTGGCGTGATAAGAATG 379
************************************************************
consensus_3126#0 GTGGGGTTTTGATTGCTGATGCAAAATGTGCTGTGAGCGTATACGAAATTGGCAGGTATT 659
consensus_3126#1 GTGGGGTTT--------------------------------------------------- 388
*********
consensus_3126#0 GGAATACCATGGGAAACTGAAATCGTTACCAGGTGAGGTGTTAAGGCTTTCAGGCTGTTG 719
consensus_3126#1 ------------------------------------------------------------
consensus_3126#0 AAAACAGGTTTGAACCAAGGGGCAAAACGGAGCCAACCTGGANCAGAAGGGAAAACACAT 779
consensus_3126#1 ------------------------------------------------------------
consensus_3126#0 TCCGAATTTTCCANCACAGGTTGTCGGGGCCTCACCGGTCCACGAAGACATTTGGAAGGC 839
consensus_3126#1 ------------------------------------------------------------
consensus_3126#0 TTTTGTGGTGCCATTGGTTGAATACCGTGGTTTAG 874
consensus_3126#1 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||