cluster # 3149

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Anopheles gambiae
cluster # 3149 cluster # 3149 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3149#0 length = 580 sequences # 1

consensus_3149#1 length = 509 sequences # 1

consensusID : consensus_3149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [CAGAATGGCCGAGGGTTACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAGCGCGCTGTGTGTGTGCGGGACCGAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTGATTATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACGCCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAGCATCTCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCACGTCGGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGCTGAGACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCGGTAAAGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC]

[+] EMBL BX466625             [CAGAATGGCCGAGGGTTACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAGCGCGCTGTGTGTGTGCGGGACCGAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTGATTATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACGCCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAGCATCTCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCACGTCGGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGCTGAGACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCGGTAAAGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC]




>consensus_3149#0
CAGAATGGCCGAGGGTTACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAG
CGCGCTGTGTGTGTGCGGGACCGAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTA
ACACCTGCCGCACTAAATGAGCACGTGATGCTGATTATACTGCTCTGCATTTTCGGCACC
ACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACG
CCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGACGGTG
CGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAGCATC
TCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCACGTC
GGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGCTGAG
ACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCGGTAA
AGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC

consensusID : consensus_3149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAACGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATGTGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAGCGGATCGTACGTTGACGCAACCACTCTTTCATATGATCTGTGGCGACTGTGGGAGTGCTGTGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACG]

[+] EMBL BX619791             [AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAACGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATGTGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAGCGGATCGTACGTTGACGCAACCACTCTTTCATATGATCTGTGGCGACTGTGGGAGTGCTGTGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTTAACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGGCACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCACCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGACGGTGCGGGAAGGCGAAACCGCATTCCTTACG]




>consensus_3149#1
AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAA
CGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATG
TGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAG
CGGATCGTACGTTGACGCAACCACTCTTTCATATGATCTGTGGCGACTGTGGGAGTGCTG
TGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATATTT
AACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGGCA
CCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGCCA
CCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGACGG
TGCGGGAAGGCGAAACCGCATTCCTTACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3149#0      ------------------------------------------------------------
consensus_3149#1      AAACCGCGACAGTAGCGACAAGAGAGTGGGCCATTTTCACAGCATTTAATACCAATTTAA 60
                                                                                  

consensus_3149#0      ------------------------------------------------------------
consensus_3149#1      CGTGTGTAAGCGTGTGCGTGTGTCTGTGCTTTTGGATGGAAATTCAACGTGAAAATTATG 120
                                                                                  

consensus_3149#0      -------------------------------------------------------CAGAA 5
consensus_3149#1      TGACCATGTGAAATAATTGCTCACGGGCCAGTGCCACGGGATCAACGATAATCACCAAAG 180
                                                                             ** * 

consensus_3149#0      TGG-CCGAGGGTT-ACGCAACCACTCTTTCATATGATCTCTGTGGCGACTGTGGGAGCGC 63
consensus_3149#1      CGGATCGTACGTTGACGCAACCACTCTTTCATATGATCT--GTGGCGACTGTGGGAGTGC 238
                       **  **   *** *************************  **************** **

consensus_3149#0      GCTGTGTGTGT----GCGGGACCGAAA--GAGACCTAGGAAGCTTCTCGTTTTATTATAT 117
consensus_3149#1      TGTGTGTGTGTATGTGCGGGACCGAAAAAGAGACCTAGGAAGCTTCTCGTTTTATTATAT 298
                        *********    ************  *******************************

consensus_3149#0      TTAACACCTGCCGCACTAAATGAGCACGTGATGCTGATTA-TACTGCTCTGCATTTTCGG 176
consensus_3149#1      TTAACACCTGCCGCACTAAATGAGCACGTGATGCTTATNNATACTGCTCTGCATTTTCGG 358
                      *********************************** **   *******************

consensus_3149#0      CACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGC 236
consensus_3149#1      CACCACCAATGCCTGGTACGAAACGGGCCCCTGGAGCACGTCCACCCGGCGCTACTACGC 418
                      ************************************************************

consensus_3149#0      CACGCCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTTTCCCGCAACGTGAC 296
consensus_3149#1      CACCGCGGACCACCAGTGGGCCGAACCGCAGTTCGATCTGAGCGTNTCCCGCAACGTGAC 478
                      ***  **************************************** **************

consensus_3149#0      GGTGCGGGAAGGCGAAACCGCATTCCTTACGTGCCGGGTGGAAAATCTGGCCAAGTACAG 356
consensus_3149#1      GGTGCGGGAAGGCGAAACCGCATTCCTTACG----------------------------- 509
                      *******************************                             

consensus_3149#0      CATCTCCTGGGTGCGGCACCACGATCTGCACATACTGGCCATCAACGCGGACACGGTTCA 416
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      CGTCGGACGAGCGGTTTCAGGCGCTGTACAACGACCAGACGGCCGAGTGGACGCTGAAGC 476
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      TGAGACGGACGCGCCGGAAGGACACCGGCATCTACGAGGTGCCAGATATCGACCATGCCG 536
consensus_3149#1      ------------------------------------------------------------
                                                                                  

consensus_3149#0      GTAAAGAGCCTGCAGCTCTACCGTGATTGTGCTCGATGAGTCGC 580
consensus_3149#1      --------------------------------------------