Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3164 cluster # 3164       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3164#0 length = 552 sequences # 1  
consensus_3164#1 length = 510 sequences # 1  

consensusID : consensus_3164#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence
                              [CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACCAGCGCACAT]

[+] EMBL BX466240             [CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACCAGCGCACAT]


>consensus_3164#0 CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTT TGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGC TGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAG ATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCA ACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAG CCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGG AAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGAT CTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTG TGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGG ACCAGCGCACAT



consensusID : consensus_3164#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence
                              [CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCCTTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAAAACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTGATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGTATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGT]

[+] EMBL BM642993             [CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCCTTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAAAACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTGATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGTATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGT]


>consensus_3164#1 CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCC TTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAA AACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTG ATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGT ATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGC CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC TGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG CCTTTACCGGTTGCGGTAAGAAGCGATCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3164#0      ------------------------------------------------------------
consensus_3164#1      CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCC 60
                                                                                  

consensus_3164#0      ------------------------------------------------------------
consensus_3164#1      TTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAA 120
                                                                                  

consensus_3164#0      ------------------------------------------------------------
consensus_3164#1      AACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTG 180
                                                                                  

consensus_3164#0      -------------------------------------------------------CCAGA 5
consensus_3164#1      ATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGT 240
                                                                              * * 

consensus_3164#0      ATCGCGCA--CGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGC 63
consensus_3164#1      ATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGC 300
                      ****       **   * ******************** *********************

consensus_3164#0      CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC 123
consensus_3164#1      CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC 360
                      ************************************************************

consensus_3164#0      TGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA 183
consensus_3164#1      TGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA 420
                      ** *********************************************************

consensus_3164#0      GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG 243
consensus_3164#1      GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG 480
                      ************************************************************

consensus_3164#0      CCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCG 303
consensus_3164#1      CCTTTACCGGTTGCGGTAAGAAGCGATCGT------------------------------ 510
                      ******************************                              

consensus_3164#0      CCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAG 363
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      GACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTC 423
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      AACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGG 483
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      GGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACC 543
consensus_3164#1      ------------------------------------------------------------
                                                                                  

consensus_3164#0      AGCGCACAT 552
consensus_3164#1      ---------
                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)