These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence [CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACCAGCGCACAT] [+] EMBL BX466240 [CCAGAATCGCGCACGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCGCCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAGGACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTCAACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGGGGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACCAGCGCACAT] consensusID : consensus_3164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCCTTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAAAACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTGATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGTATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGT] [+] EMBL BM642993 [CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCCTTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAAAACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTGATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGTATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGCCGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGCTGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATAGACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACGCCTTTACCGGTTGCGGTAAGAAGCGATCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3164#0 ------------------------------------------------------------ consensus_3164#1 CCGGAACCGGGAAGGCTCAAGCACGCAGCTACTTAGCTTGTTTCCGTAAGAGGATTTCCC 60 consensus_3164#0 ------------------------------------------------------------ consensus_3164#1 TTTACATAGTGAGCGATTTCGACTGATCCCGTGAGATTGTGAATTTGAAAAAAGCAACAA 120 consensus_3164#0 ------------------------------------------------------------ consensus_3164#1 AACACATACACATACCCATTCCGTGGAAACTCACATGTGCTGGCGTGCTTTTTGTTGGTG 180 consensus_3164#0 -------------------------------------------------------CCAGA 5 consensus_3164#1 ATCGCACGAGGTAACCCATACGTTTGGTGAGCAGTGTTCCTGGTGCATCGAACGTACTGT 240 * * consensus_3164#0 ATCGCGCA--CGAGGGTTACAAATTGAAACCGCAAGTCAAAGCGCGTGAGTGAATTTTGC 63 consensus_3164#1 ATCGTTTTGCTGAACCTGACAAATTGAAACCGCAAGTCTAAGCGCGTGAGTGAATTTTGC 300 **** ** * ******************** ********************* consensus_3164#0 CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC 123 consensus_3164#1 CGTATCTTCAAAAGGCTTCAGCAGTGCACAGGATGACTCACAGAACTGCGGCCAAGCTGC 360 ************************************************************ consensus_3164#0 TGCTGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA 183 consensus_3164#1 TGATGGCAGTTGTATCGCTCTTCTGCGTACTTCAGATGCTGGAATGCGGTGTGGTAGATA 420 ** ********************************************************* consensus_3164#0 GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG 243 consensus_3164#1 GACAACCTCGGGCCTACAAACAGTACAACACGGAACCACAGAAGAGACCGTTCTGCAACG 480 ************************************************************ consensus_3164#0 CCTTTACCGGTTGCGGTAAGAAGCGATCGTCTGCCTCGAGTCCACCGACGGCCGCAGCCG 303 consensus_3164#1 CCTTTACCGGTTGCGGTAAGAAGCGATCGT------------------------------ 510 ****************************** consensus_3164#0 CCGCTGCCGCCGCCGCCATGCTACAGGCGACACCTGCAAACCATGGACCCAGGGCGGAAG 363 consensus_3164#1 ------------------------------------------------------------ consensus_3164#0 GACCGTATGGGCAGTGATTTTGACCCGAACGAAGAATCGATCAGCAGTCTGCTCGATCTC 423 consensus_3164#1 ------------------------------------------------------------ consensus_3164#0 AACACGGAACCGGCGGTGGAGGATCTGCTCCGACAGATCATGTCCGAGGCGAAGCTGTGG 483 consensus_3164#1 ------------------------------------------------------------ consensus_3164#0 GGAAGCGATCCAGGAAGCGAACCGGGGAGATTTATCTGCAAAAGTCGGGCATGAAGGACC 543 consensus_3164#1 ------------------------------------------------------------ consensus_3164#0 AGCGCACAT 552 consensus_3164#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||