These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence [CCGCGGACGCGTGGGGCCCGTCAACTGGGTGGACCCGGATCGGCACCGGACTCACCGCGACCGAAAGTGATCTGGACGTCGGAGTTGCGGCGCACGATTCACACGGTACAGAACATCCCGGGACCGCGGGCCGCCATCAAGGATCTGAACGAGATTAATGCGGGAATTTGCGAGGGCTTAACGTATGAGGAAATACAGGAACGGTTCCCGCAAGAGTTTGCGTGGCGCGATCAGGACAAGTTCAAGTACCGATACCCGCACGGGGAATCTTATCTGGATCTGTTGCAGCGCGTCGACAGCGTGGTGCAAGCGCTGCTGACCAATACCGATGTGCTGGTCGTGTCGCACCAGGCCGTGCTGCGGTGTATTATGGCGTACTTCAAGGGTGTTAAGCCAGATGATGTGCCATACATAAACGTGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGGTTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGCCGAAGAACTGCTCCACTAGTCGTACCACGGCCGATGCCCTCACAACCGTACCGGCCCACTTTGATGCGCCCCTTACGCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGCTTGGTCGGAAGTCCTTTGGCATGAGGAGATGCATCACGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGTTGTTAGTACGCTCCGGCAATACATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATG] [+] EMBL BM630523 [CCGCGGACGCGTGGGGCCCGTCAACTGGGTGGACCCGGATCGGCACCGGACTCACCGCGACCGAAAGTGATCTGGACGTCGGAGTTGCGGCGCACGATTCACACGGTACAGAACATCCCGGGACCGCGGGCCGCCATCAAGGATCTGAACGAGATTAATGCGGGAATTTGCGAGGGCTTAACGTATGAGGAAATACAGGAACGGTTCCCGCAAGAGTTTGCGTGGCGCGATCAGGACAAGTTCAAGTACCGATACCCGCACGGGGAATCTTATCTGGATCTGTTGCAGCGCGTCGACAGCGTGGTGCAAGCGCTGCTGACCAATACCGATGTGCTGGTCGTGTCGCACCAGGCCGTGCTGCGGTGTATTATGGCGTACTTCAAGGGTGTTAAGCCAGATGATGTGCCATACATAAACGTGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGGTTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGCCGAAGAACTGCTCCACTAGTCGTACCACGGCCGATGCCCTCACAACCGTACCGGCCCACTTTGATGCGCCCCTTACGCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGCTTGGTCGGAAGTCCTTTGGCATGAG ] [+] EMBL BM632958 [ ccgATAAACGTGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGGTTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGCCGAAGAACTGCTCCACTAGTCGTACCACGGCCGATGCCCTCACAACCGTACCGGCCCACTTTGATGCGCCCCTTACGCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGCTTGGTCGGAAGTCCTTTGGCATGAGGAGATGCATCACGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGTTGTTAGTACGCTCCGGCAATACATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATG] consensusID : consensus_3184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence [GGCAGAATCGGCACGTAGGGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGGTTGTTAGTACGCTCCGGCAATACATATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATGCTAATTTTGTGCAACACTGTACGCACACAGAGAGGAGCACCACGGCCTTTTAGAAGATGATGCATTTTGTTAGCGGTGGAAAAAGCCACACAAGAGAGATCCATTAGGCTGCTTATTGTTAATGGTGTCGCAGAGTTGGAAGGCATAATTTGTGGTTAAAAAACACACACACGAAACAACACGAGAGGTTGAACATAACGGTTGTAAAGGCAAATCACACAGGATTTTCACAGTCACAGAGGANATGTTTGATAATCAGCTAATGATGATGATTCAGCACACAAGCAAACACACAAAAAAGGGGGTACAGAAAGAATGATTTCAATTGCATTTCAATTGGCTTTCCGCTTAACGTTAATTAGTGTGTGTGCAAGCCAAGGAAATCCNTGTTTACCNGGGCACACGTCGAAAGTGTCCCTTAAGACACTTTTGGATTCCGGCGGAAGGAGAAAAGACACCTTNCTACCGNAAACACAGTGTTNACAAACCCGGGGGGTTTAAAAAAGCCGACCCCACATAAAGGGGGNAGCAAGGGGGACACTATCACAACATGGGCGGGANCCATTTGGCAGGCG] [+] EMBL BX467757 [GGCAGAATCGGCACGTAGGGTTGATAATAGTACTTTAGTGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGAGGTCGTAGTCGTCGTAATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGGTTGTTAGTACGCTCCGGCAATACATATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAATATATAAAAACACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGCAAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATGCTAATTTTGTGCAACACTGTACGCACACAGAGAGGAGCACCACGGCCTTTTAGAAGATGATGCATTTTGTTAGCGGTGGAAAAAGCCACACAAGAGAGATCCATTAGGCTGCTTATTGTTAATGGTGTCGCAGAGTTGGAAGGCATAATTTGTGGTTAAAAAACACACACACGAAACAACACGAGAGGTTGAACATAACGGTTGTAAAGGCAAATCACACAGGATTTTCACAGTCACAGAGGANATGTTTGATAATCAGCTAATGATGATGATTCAGCACACAAGCAAACACACAAAAAAGGGGGTACAGAAAGAATGATTTCAATTGCATTTCAATTGGCTTTCCGCTTAACGTTAATTAGTGTGTGTGCAAGCCAAGGAAATCCNTGTTTACCNGGGCACACGTCGAAAGTGTCCCTTAAGACACTTTTGGATTCCGGCGGAAGGAGAAAAGACACCTTNCTACCGNAAACACAGTGTTNACAAACCCGGGGGGTTTAAAAAAGCCGACCCCACATAAAGGGGGNAGCAAGGGGGACACTATCACAACATGGGCGGGANCCATTTGGCAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3184#0 CCGCGGACGCGTGGGGCCCGTCAACTGGGTGGACCCGGATCGGCACCGGACTCACCGCGA 60 consensus_3184#1 --------------------------------GGCAGAATCGGCACG-----TAGGGTTG 23 * * ******** * * consensus_3184#0 CCGAAAGTGATCTGGACGTCGGAGTTGCGGCGCACGATTCACACGGTACAGAACATCCCG 120 consensus_3184#1 ATAATAGTACTTTAG-TGATGGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTA 82 * *** * * * * ** * * ** ** * *** * ** *** consensus_3184#0 GGACCGCG-GGCCGCCATCAAGGATCTGAACGAGATTAATGCGGGAATTTGCGAGGGCTT 179 consensus_3184#1 GGAGGTCGTAGTCGTCGT-AATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTC 141 *** ** * ** * * ** * * * ** * **** ** consensus_3184#0 AACGTATGAGGAAATACAGGAACGGTTCCCGCAAGAGTTTGCGTGGCGCGATCAGGACAA 239 consensus_3184#1 AGGGGTTGTTAGTACGCTCCGGCAATACATATAACCACAGGAGAAAAGCCA-CAAACAAA 200 * * ** * * * * * ** * * ** * ** ** consensus_3184#0 GTTCAAGTACCGATACCCGCACGGGGAAT-CTTATCTGGATCTGTTGCAGCGCGTCGACA 298 consensus_3184#1 ACACGACGACACGTGCTCGCTTTATAAACGCTCAACTATTTTTGTCG-GCTACGCCCGCA 259 * * ** * * *** ** ** * ** * *** * ** * ** consensus_3184#0 GCGTGGTGCAAGCGCTGCTGACCAATACCGATGTGCTGGTCGTGTCGCACCAGGCCGTGC 358 consensus_3184#1 TCG-GCTACGGAT-CTTTCAAT--ATATAAAAACACACAACATAGTTCTTCCAGCAACAG 315 ** * * * ** * *** * * * * * * ** consensus_3184#0 TGCGGTGTATTATGGCGTACTTCAAGGGTGTTAAGCCAGATGATGTGCCATACATAAACG 418 consensus_3184#1 CACAGTTTGT-ACAAAGCAGTTGGCAAGAGCGGAGC--------ACGTTGCACGTTTGCG 366 * ** * * * * * ** * * *** * ** * ** consensus_3184#0 TGCCGTTGCACACGTTGCTCATAGTGCGATCGTATGGGTACGATTTTGTGGTCGAGACGG 478 consensus_3184#1 CAGTTTTAGG-ATGCTAATTTT-GTGCAACACTGTACGCACACAGAGAGGAGCACCACGG 424 ** * * * * * **** * * * * ** * * **** consensus_3184#0 TTCCACTAAAGGTGGAATGTGTAGATACTTATCGCATCCAGC-CGAAGAACTGCTCCACT 537 consensus_3184#1 CCTTTTAGAAGATGATGCATTTTGTTAGCGGTGGAAAAAGCCACACAAGAGAGATCCATT 484 *** ** * * * ** * * * * * * * * **** * consensus_3184#0 AGTCGTACCACGGCCGATGCCCTCACAACCGTACC-GGCCCACTTTGATGCGCCCCTTAC 596 consensus_3184#1 AGGCTGCTTATTGTTAATGGTGTCGCAGAGTTGGAAGGCATAATTTGTGGT--------- 535 ** * * * *** ** ** * *** * **** * consensus_3184#0 GCAGCAAATGTCCACGACGATCAGCTAAAGAGACTGCACACAGTCACTAATTCAACCCGC 656 consensus_3184#1 -TAAAAAACACACACACGAAACAACACGAGAGGTTGAACATAA-CGGTTGTAAAGGCAAA 593 * *** *** * ** * **** ** *** * * * * * * consensus_3184#0 TTGGTCGGAAGTCCTTTGGCATGAGGAGATGCATCACGTTGATAATAGTACTTTAGTGAT 716 consensus_3184#1 TCACACAGGATTTTCACAGTCACAGAGGANATGT----TTGATAATCA---GCTAATGAT 646 * * * * * * ** ** * ******** ** **** consensus_3184#0 GGCGATCAACCGTACAACAAACAAACCAACAAAAATCGTAGGA-GGTCGTAGTCGTCGTA 775 consensus_3184#1 GATGATTCAGCACACAA---GCAAACACACAAAAAAGGGGGTACAGAAAGAATGATTTCA 703 * *** * * **** ***** ******* * * * * * * * * consensus_3184#0 ATTCTGCCTCCTACATCTACATCTCAATTACTCTACCCTCAGGGTTGTTAGTACGCTCCG 835 consensus_3184#1 ATTGCATTTCA---ATTGGCTTTCCGCTTAACGT-TAATTAGTGT-GTGTGCAAGCCAAG 758 *** ** ** * * * *** * * ** ** ** * * ** * consensus_3184#0 GCAATACATAACCACAGGAGAAAAGCCACAAACAAAACACGACGACACGTGCTCGCTTTA 895 consensus_3184#1 GAAATCCNTGTTTACCNGGGCACACGTCGAAAGTGTCCCTTAAGACACTTTTGGATTCCG 818 * *** * * ** * * * * *** * * ***** * * consensus_3184#0 T--AAACGCTCAACTATTTTTGTCGGCTACGCCCGCATCGGCTACGGATCTTTCAA-TAT 952 consensus_3184#1 GCGGAAGGAGAAAAGACACCTTNCTACCGNAAACACAGTGTTNACAAACCCGGGGGGTTT 878 ** * ** * * * * * ** * ** * * * * consensus_3184#0 ATAAAAAC--ACACAACATAGTTCTTCCAGCAACAGCACAGTTTGTACAAAGCAGTTGGC 1010 consensus_3184#1 AAAAAAGCCGACCCCACATAAAGGGGGNAGCAAGGGGGACACTATCACAACATGGGCGGG 938 * **** * ** * ***** ***** * * **** * ** consensus_3184#0 AAGAGCGGAGCACGTTGCACGTTTGCGCAGTTTTAGGATG 1050 consensus_3184#1 ANCCATTTGGCAGGCG------------------------ 954 * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||