These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence [CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTCCGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTG--TGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTG------TGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTGGCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATATTCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAGCGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTACTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCCCGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA] [+] EMBL BM580672 [CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTCCGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTG TGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTG TGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTGGCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATATTCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAGCGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTACTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCCCGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA] [+] EMBL BM605407 [ ccgGTCAGTCCAACAACTTTTCCGCGGAAAAGCGGAAATTTTCTCCTGCGA CAGCAGCAGCGACCCAAGTGCAGTGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCAAAACTAGTAACAGTGTTTAGAA AGAGAGAGACCCTTGCACCATTGTGAATACTATTGTGTGTGTGTCTGTTTCTTCGCTTCTTAGAATCCCGTTTATTGGTGAACGCAACACGCGCCTAACATCGTTTCGAATACCATAGCATTTGTGTGTGTGTGTATGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTAC ] consensusID : consensus_3187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [CCGAGCGGCTTCGCTGTGCTGAGTGTGTTGATGGATGCCGTGACCTGTGTGTGTGCGTGTGCGTGTGTGTGCATAAGAAAGGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT] [+] EMBL BM595050 [CCGAGCGGCTTCGCTGTGCTGAGTGTGTTGATGGATGCCGTGACCTGTGTGTGTGCGTGTGCGTGTGTGTGCATAAGAAAGGAAAATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATACATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGAATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAACACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGTGTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3187#0 CCGCACGCTCTCGCGCATCTCGCCGTGCAGTCAGTCAGTCAGTCAGTCCATCAACTTTTC 60 consensus_3187#1 ------------------------------CCGAGCGGCT--TCGCTGTGCTGAGTGTGT 28 * * * ** * * * * consensus_3187#0 CGCGGAAAAGCGGAAATTTTCTCCTGCGACAGCAGCAGCAGCGACCCAAGTGCAGTGAAA 120 consensus_3187#1 TGATGGATGCCGTGACCTGTG---TGTGTGCGTGTGCGTGTGTGTGCATAAGAAAGGAAA 85 * * * ** * * * ** * * * ** * * **** consensus_3187#0 ATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATAC 180 consensus_3187#1 ATCATCCCAATCACTATTTTATCCATTCCTACGGCGTGTTAATAACCCCCTCTATTATAC 145 ************************************************************ consensus_3187#0 ATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGA 240 consensus_3187#1 ATGAAACTCATAACTAGTAACAGTGTTTAGAAAGAGAGAGAGACCCTTGCGCCATTGTGA 205 ************************************************************ consensus_3187#0 ATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAAC 300 consensus_3187#1 ATACCATCGTGTGTGTGTGTTTCTTCGCTTCTTAGAATCCCGTTTTTTGGTGCACGCAAC 265 ************************************************************ consensus_3187#0 ACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGT 360 consensus_3187#1 ACGCGCCTAACATCGTTTCGAATACCTTAGCATTTGTGTGTGTGTGTGTCTGTTAAACGT 325 ************************************************************ consensus_3187#0 GTATGTGGTCCGTTTGTACATAAAAGTGGGCAGTAAAAAAAGCAAAAAAAAAAATGGGTG 420 consensus_3187#1 GTATGTGGTCCGTTTGTACATAAAAGTGGGCAGT-------------------------- 359 ********************************** consensus_3187#0 GCAAGTCCTCCCCACGCACGCCAGGTGTTGGTGTCTGTGCCGCGCCAATGAAGCCAATAT 480 consensus_3187#1 ------------------------------------------------------------ consensus_3187#0 TCTGCTAGTGCGCGATCGTGTTGAAAAGCAAAGGGTGGTTCAAATATAGAAATAAGCAAG 540 consensus_3187#1 ------------------------------------------------------------ consensus_3187#0 CGCAAACGTACGTTTGAAAAAGGGCCAGCACAGGAAGAACCCGCTGTGCAACACACACTA 600 consensus_3187#1 ------------------------------------------------------------ consensus_3187#0 CTTCCTCCACAAGAGTTCGAGGAGTAGGAGGAGGCCGTTGCGCAACCCGCGTTGATATCC 660 consensus_3187#1 ------------------------------------------------------------ consensus_3187#0 CGTGTGTGTGTGAGCGCGCCCGCTTCATCTCCCGCTA 697 consensus_3187#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||