These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 892 fasta sequence [CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAAGAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTACAAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGTAAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCCCCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGCAAAGGCGAATGAAACTAAGAGTCAAATTCAATTCAAGTCAGCCCTCGCCATGTTGATAGTCAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTTAGTGTAGATCTACTAAATCTTTTCTCTTAGTAAGCCTGCGCTGGCGATACATGGTTTTTGATGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGAGCTATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTT-TACCACTTCTATCACTCTACGTCTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCCGATCGTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAGCTAGTTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTGGCGCAGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA] [+] EMBL BM630263 [CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAAGAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTACAAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGTAAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCCCCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGCAAAGGCGAATGAAACTAAGAGTCAAATTCAATTCAAGTCAGCCCTCGCCATGTTGATAGTCAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTTAGTGTAGATCTACTAAATCTTTTCTCTTAGTAAGCCTGCGCTGGCGATACATGGTTTTTGATGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGAGCTATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTT TACCACTTCTATCACTCTACGTCTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTT ] [+] EMBL BX619166 [ TTGCCATGTTTAAGTTTCCTAC GCAAACTTTNTACCACTTCTATCACTCTACGTCTACTAATACACCTTCTTCCGATTACTACTATCATACACTATCACACTAATAGTGCACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCCGATCGTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAGCTAGTTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTGGCGCAGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA] consensusID : consensus_3190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [ATAGTAATGCAGTGGCGCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACGTTTTGTACTGCAATGCGATCACCAACTCAGCCACACTCAGCCCGTGTAATGTATGTGTTTATGTATTTGTTTTAGCTATTTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATAAGGATTCACTGGGTTTAAACAATCGCGACAAAACCAAGCAAAACATTCTGGGGAAAGAAAAACGTCTTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCACCAAATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAAAACATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTTTTTTTTTGTTGTCCGTTCAATTATTTACAATCACAAGTACATTGTGAACGATGGTCAGCCAGACCGATGGATTGCAAAATACATACTAAAAACAAAAGAGTGAATGCGTTTTCAATGCAATTAAAATGCCATCATCAG] [+] EMBL BX613422 [ATAGTAATGCAGTGGCGCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACGTTTTGTACTGCAATGCGATCACCAACTCAGCCACACTCAGCCCGTGTAATGTATGTGTTTATGTATTTGTTTTAGCTATTTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATAAGGATTCACTGGGTTTAAACAATCGCGACAAAACCAAGCAAAACATTCTGGGGAAAGAAAAACGTCTTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCACCAAATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAAAACATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTTTTTTTTTGTTGTCCGTTCAATTATTTACAATCACAAGTACATTGTGAACGATGGTCAGCCAGACCGATGGATTGCAAAATACATACTAAAAACAAAAGAGTGAATGCGTTTTCAATGCAATTAAAATGCCATCATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3190#0 CCGCAAGCGTCAAGCGGATGTCAACGCTGCGTGACGCTAATGTCAAACTAAACAAAACAA 60 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 GAAAATAAGAGAAAAAAATGAACAAAACACAAGTCAGTAAGTAGCAAGTAAGTTAAGTAC 120 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 AAGAAACTAAGAGAGCAAACGAGGGCGTTAATGTGTTTAAGTGGTTAAGGTGGACAATGT 180 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 AAGCAATGTAACGCGATTCAATTAACACAAACATGAACAAAGCAAACGTGACAAAGCGCC 240 consensus_3190#1 ------------------------------------------------------------ consensus_3190#0 CCCATTATCAAGTCTTCTAGCCATGTCAGGTGGAGAAAGAGAAGGAGGAGGAGCAGTAGC 300 consensus_3190#1 --------------------------------------------ATAGTAATGCAGTGGC 16 * ***** ** consensus_3190#0 AAAGGCGAATGAAACTAAGAGTCAAAT-TCAATTCAAGTCAGCCCTCGCCATGTTGATAG 359 consensus_3190#1 GCAGAGAAAAGGGATCGGTAGAGAGATATTAAATCGCAGTAACGTTT--TGTACTG-CAA 73 ** ** * * ** * ** * ** ** * * * * ** * consensus_3190#0 TCAAATTAAAATCGAAAGCGCCCTCTCAATCCATCAAAAGCCAATCAGTTTGTGCGTCTT 419 consensus_3190#1 TGCGATCACCAACTCAGCCACACTC--AGCCCGTGTAATGT--ATGTGTTTATGTAT-TT 128 * ** * * * * * * *** * ** * ** * ** **** ** * ** consensus_3190#0 AGTGTAGATCTACTAAATCTTTTCTCTTAGT--AAGCCTGCGCTGGCGATACATGGTTTT 477 consensus_3190#1 GTTTTAGCTAT-TTAAAAAAATACATTTAATCGAAGCGTACATCGCAGGCATAAGGATTC 187 * *** * * **** * * *** * **** * * * * * * ** ** consensus_3190#0 TGATGACAAACTTCTTCATGCAGCGCCCAATATTCGCAGTCAGTACCACAGAGAGAGAGA 537 consensus_3190#1 -----ACTGGGTTTAAACAATCGCGACAAAACCAAGCAA--AACATTCTGGGGAAAGAAA 240 ** ** *** * ** *** * * * ** *** * consensus_3190#0 GCTATCTGTTTGCCATGTTTAAGTTTCCTACTGCAAACTTTTACCACTTCTATCACTCTA 597 consensus_3190#1 AACGTC---TTACCGTACTTGTACTAAAAACCAACATCATTCATACTGTCTATCTCCCAC 297 ** ** ** * ** * ** * * ** * ****** * * consensus_3190#0 CGTCTACTAATACACCTTCTTCCG-ATTACTACTATCATACACTATCACACTAATAGTGC 656 consensus_3190#1 CAAATCGTAATCCCTTTCCCTTTACATAGTTAATAGAACAACTTCCGAAACAAAACAAAA 357 * * **** * * * * ** ** ** * * * * ** ** consensus_3190#0 ACTGCAATGCTCGAAACTCTTGTCAGTTCTGAAAACGCAATCTTTTTATCTGTTCAACCC 716 consensus_3190#1 AACATATATTATTAGACTAATGGAAGCAGAGAGGAGGTGAATTGTTTCTTTTTTT----T 413 * * * *** ** ** ** * * * * *** * * ** consensus_3190#0 GATCGTATAACTTGTACTAAAACTGTGGACAAAAAAACACACACACACACACACAGAAAG 776 consensus_3190#1 TTTTTTGTTGTCCGTTC---AATTATTTACAATCACAAGTACATTGTGAACGATGGTCAG 470 * * * ** * ** * * **** * * *** * * * ** consensus_3190#0 CTAGTTTTTACATTAACGACAAGCAAAATAAACCCTCGTGTTGTGAATAGTAATGCAGTG 836 consensus_3190#1 CCAGACCGATGGATTGCAAAATACATACTAAAAACAAAAGA-GTGAATGCGTTTTCAATG 529 * ** * * * * ** * **** * * ****** * ** ** consensus_3190#0 GCGCAGAGAAAAGGATCGGTAAGAGAGATATTAAAATCGCAGTAAACGTTNTTGTA 892 consensus_3190#1 -CAATTAAAATGCCATCATCAG---------------------------------- 550 * * ** *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||