These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence [CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAATCAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTGTATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATAT--ACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTA--GTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTG---TTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAGATAACAT] [+] EMBL BM629921 [CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAATCAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTGTATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATAT ACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTA GTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTG TTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTA ] [+] EMBL BX616520 [ ACCAGCAACACTCCATATATTGACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCACTTGCGCTGC TCCTTAGTGTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGGTAAGGGAATAAGTCACATCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAGCAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCTGTGGAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAAGTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGTTTTTTCCTT CTTTTGTTAATTCGATAAAAT CAGTGGCAATATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAGATAACAT] consensusID : consensus_3191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATCCGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC] [+] EMBL BX612768 [TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATCCGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3191#0 CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAAT 60 consensus_3191#1 ------------------------TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTT 36 * * ** * *** * ***** *** * consensus_3191#0 CAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTG 120 consensus_3191#1 AATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCG 96 * ** * ** * * ** * ** ** * * * ** ** * * * consensus_3191#0 -TATAAGAGCG--ACTTATTTTT-CGCAACCAAACCAGCAACACTCCATATATACTAATT 176 consensus_3191#1 GCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACT--TT 154 ** **** ***** *** **** * ** * ** *** ** consensus_3191#0 GATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGT 236 consensus_3191#1 AGTGGA--TGAGAGCAGCTTTTTACGTTAGTTT-------CTTGTTTATTTTGCTCTTCA 205 * * * **** ** * * * *** **** consensus_3191#0 AGTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGT--CAAGTTTAT 294 consensus_3191#1 AACAAAAACACATTACCCTTCTCTTATCTA-AAATCCGTTCCTTTTTGTGTTAAAATGGA 264 * *** * **** * **** * * * *** ** ** * consensus_3191#0 GGTTACGCACACAAGC-TGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAA 353 consensus_3191#1 GGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAA 324 ** * ** * ***** * * ** *** **** ** consensus_3191#0 TGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCC 413 consensus_3191#1 AAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGG 384 *** * * * * * ** ** * ** * ** * * ** * consensus_3191#0 GTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCG 473 consensus_3191#1 ATTTTAATTGTGACATCTGTAC-------------------------------------- 406 *** * ** * * * * consensus_3191#0 TGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTGTTTAGTTTAATCT 533 consensus_3191#1 ------------------------------------------------------------ consensus_3191#0 ACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGT 593 consensus_3191#1 ------------------------------------------------------------ consensus_3191#0 TTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAA 653 consensus_3191#1 ------------------------------------------------------------ consensus_3191#0 AATGCAGTGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAG 713 consensus_3191#1 ------------------------------------------------------------ consensus_3191#0 TTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATT 773 consensus_3191#1 ------------------------------------------------------------ consensus_3191#0 TTGCTCTTCAGATAACAT 791 consensus_3191#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||