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Anopheles gambiae
cluster # 3191 cluster # 3191       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3191#0 length = 791 sequences # 2  
consensus_3191#1 length = 406 sequences # 1  

consensusID : consensus_3191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 791
fasta sequence
                              [CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAATCAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTGTATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATAT--ACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTA--GTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTG---TTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAGATAACAT]

[+] EMBL BM629921             [CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAATCAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTGTATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATAT  ACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTA  GTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTG   TTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTA                                                                                                                           ]
[+] EMBL BX616520             [                                                                                                                                                     ACCAGCAACACTCCATATATTGACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCACTTGCGCTGC TCCTTAGTGTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGGTAAGGGAATAAGTCACATCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAGCAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCTGTGGAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAAGTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGTTTTTTCCTT   CTTTTGTTAATTCGATAAAAT CAGTGGCAATATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAGATAACAT]


>consensus_3191#0 CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAAT CAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTG TATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATATACTAATTGATT TACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTAGTG GTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTAC GCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAG AGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGAT TTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTG GAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTGTTTAGTTTAATCTACATGAA GCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTG TTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAG TGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATT GTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCT TCAGATAACAT



consensusID : consensus_3191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence
                              [TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATCCGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC]

[+] EMBL BX612768             [TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATCCGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC]


>consensus_3191#1 TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTT TTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTA CGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTT AGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATC CGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAAT TAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATC GAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3191#0      CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAAT 60
consensus_3191#1      ------------------------TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTT 36
                                              *  *   ** *   *** *     ***** ***  *

consensus_3191#0      CAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTG 120
consensus_3191#1      AATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCG 96
                       *       **   *  **  *  * ** * ** **  *   * *   ** ** *  * *

consensus_3191#0      -TATAAGAGCG--ACTTATTTTT-CGCAACCAAACCAGCAACACTCCATATATACTAATT 176
consensus_3191#1      GCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACT--TT 154
                        ** ****    *****  *** ****     *       ** *    **  ***  **

consensus_3191#0      GATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGT 236
consensus_3191#1      AGTGGA--TGAGAGCAGCTTTTTACGTTAGTTT-------CTTGTTTATTTTGCTCTTCA 205
                        *  *  * ****    **  *     *           *   ***    ****     

consensus_3191#0      AGTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGT--CAAGTTTAT 294
consensus_3191#1      AACAAAAACACATTACCCTTCTCTTATCTA-AAATCCGTTCCTTTTTGTGTTAAAATGGA 264
                      *      ***   *         **** *  **** * * * ***  **   **  *   

consensus_3191#0      GGTTACGCACACAAGC-TGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAA 353
consensus_3191#1      GGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAA 324
                      **  *  **        *   *****   *   *       **  *** ****     **

consensus_3191#0      TGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCC 413
consensus_3191#1      AAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGG 384
                           *** * * *  * *    ** ** *  **  *  ** *   *    **   *   

consensus_3191#0      GTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCG 473
consensus_3191#1      ATTTTAATTGTGACATCTGTAC-------------------------------------- 406
                       *** * ** * * *    *                                        

consensus_3191#0      TGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTGTTTAGTTTAATCT 533
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      ACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGT 593
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      TTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAA 653
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      AATGCAGTGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAG 713
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      TTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATT 773
consensus_3191#1      ------------------------------------------------------------
                                                                                  

consensus_3191#0      TTGCTCTTCAGATAACAT 791
consensus_3191#1      ------------------
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)