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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence
[CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAATCAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTGTATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATAT--ACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTA--GTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTG---TTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAGATAACAT]
[+] EMBL BM629921 [CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAATCAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTGTATAAGAGCGACTTATTTTTCGCAACCAAACCAGCAACACTCCATATAT ACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGTA GTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTG TTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTA ]
[+] EMBL BX616520 [ ACCAGCAACACTCCATATATTGACTAATTGATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCACTTGCGCTGC TCCTTAGTGTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGTCAAGTTTATGGTTACGCACACAAGCTGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAATGGGTAAGGGAATAAGTCACATCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCCGTTTGATTTTTAAAACAAATGGAGCAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCGTGCTGTGGAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTTTTGTTTAGTTTAATCTACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAAGTATTTTGTTAGTTTCGTTTTTTTGTTTTTAATTTTGTTTATCGATGTTTTTTCCTT CTTTTGTTAATTCGATAAAAT CAGTGGCAATATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAGATAACAT]
consensusID : consensus_3191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATCCGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC]
[+] EMBL BX612768 [TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTTAATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACTTTAGTGGATGAGAGCAGCTTTTTACGTTAGTTTCTTGTTTATTTTGCTCTTCAAACAAAAACACATTACCCTTCTCTTATCTAAAATCCGTTCCTTTTTGTGTTAAAATGGAGGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAAAAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGGATTTTAATTGTGACATCTGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3191#0 CCGGGCGAACAAATGGACTTCTGCTCCATCAAGCTCACTTTTCGCAGGGAGAAGATGAAT 60
consensus_3191#1 ------------------------TTTAGTTAGTTTCGTTTGCAGGTAGAGAATATGGTT 36
* * ** * *** * ***** *** *
consensus_3191#0 CAATTTCACGTACACGGTCCGCGGTAGTCATTTAGAAGAGGCGAACGAACCGTGCGCGTG 120
consensus_3191#1 AATCGATGTGTGGCCCCTCTCCTTTTGTTAATTCGATAAAATGCAGTGACAGTACAAGCG 96
* ** * ** * * ** * ** ** * * * ** ** * * *
consensus_3191#0 -TATAAGAGCG--ACTTATTTTT-CGCAACCAAACCAGCAACACTCCATATATACTAATT 176
consensus_3191#1 GCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAGTTCAATTGTGATGGACT--TT 154
** **** ***** *** **** * ** * ** *** **
consensus_3191#0 GATTTACCTTAGAGTGATTTAATGGCCAAACCCAAACAAACCCATTTGCGCTGCTTCCGT 236
consensus_3191#1 AGTGGA--TGAGAGCAGCTTTTTACGTTAGTTT-------CTTGTTTATTTTGCTCTTCA 205
* * * **** ** * * * *** ****
consensus_3191#0 AGTGGTCACAGTGTGTTTCGACGTTATTTTTAAATTCATACATTTCAGT--CAAGTTTAT 294
consensus_3191#1 AACAAAAACACATTACCCTTCTCTTATCTA-AAATCCGTTCCTTTTTGTGTTAAAATGGA 264
* *** * **** * **** * * * *** ** ** *
consensus_3191#0 GGTTACGCACACAAGC-TGCGTATACCAGTACCAGGCCAAAAGTGGTAGCAAGAGTAGAA 353
consensus_3191#1 GGAAAAACAAGTTTATATTTATATACGTATGATAATTAGTCAGGCGTAACAAGCAACCAA 324
** * ** * ***** * * ** *** **** **
consensus_3191#0 TGGATAGAGGAATAAGTCACACCACGAACTCGAAAAGTCATCTAAGCATTCGTTAAATCC 413
consensus_3191#1 AAACAAGAAGCAAATTTTAGGAAACAAAATTAAATCGAAATATGCTCTAGTGTGGTAGGG 384
*** * * * * * ** ** * ** * ** * * ** *
consensus_3191#0 GTTTGATTTTTAAAACAAATGGAACAAAGTGAAGGTTTCTAGTCATTCGTCTGTCTCCCG 473
consensus_3191#1 ATTTTAATTGTGACATCTGTAC-------------------------------------- 406
*** * ** * * * *
consensus_3191#0 TGCAGTGGAGCCCCAGATGCTATTATTTGATTGTTTTGTTTTTTTTGTTTAGTTTAATCT 533
consensus_3191#1 ------------------------------------------------------------
consensus_3191#0 ACATGAAGCGAGTATAACTTTTGCGTGCTTAATGGTGTATAATTATTTTGTTAGTTTCGT 593
consensus_3191#1 ------------------------------------------------------------
consensus_3191#0 TTTTTTGTTTTTAATTTTGTTTATCGATGGTTTTTCCTTCTCCTTTTGTTAATTCGATAA 653
consensus_3191#1 ------------------------------------------------------------
consensus_3191#0 AATGCAGTGACAGTATAAGCGGCATTAGAGTAGAACTTACATTTACGCATAAGTATTTAG 713
consensus_3191#1 ------------------------------------------------------------
consensus_3191#0 TTCAATTGTGATGGACTTTACTGGATGGGAGCAGCTTTTTACGTTAGTTTCTTGTTTATT 773
consensus_3191#1 ------------------------------------------------------------
consensus_3191#0 TTGCTCTTCAGATAACAT 791
consensus_3191#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||