These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATGGTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGTCGGACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGCTGCTGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGACGATGTCGTCATCAACGCGTTCAAGGCCTTCGACACCAACGGCAAGATCGATGGCGAGAAGTTCCGCTTCGCCCTGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACCAAAAAACTAACCTAAAAAAAATCT] [+] EMBL BM650526 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCGAATTCAAAGAGGCTTTCGCGCTAATGGACAACGACAAGGATGGTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGTCGGACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGCTGCTGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGACGATGTCGTCATCAACGCGTTCAAGGCCTTCGACACCAACGGCAAGATCGATGGCGAGAAGTTCCGCTTCGCCCTGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTCGATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTCACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACCAAAAAACTAACCTAAAAAAAATCT] consensusID : consensus_3195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [CCGCCCACGCGTCCGGTTCTAGACCGCGAGGACGACCGGCGGCGTGACGGTGTTTCCATGCCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGGCGGTAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGTGGAAAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATATATATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAATACAAAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCAGTCGTGCGATAATATGCAAAAGAGAAAACTATCCAGTCATGATCATAAATATCCCCCAGCACTGATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGTACAAGATTTTTCTTCTAATACGGCAAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAAAA] [+] EMBL BM637769 [CCGCCCACGCGTCCGGTTCTAGACCGCGAGGACGACCGGCGGCGTGACGGTGTTTCCATGCCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGGCGGTAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGTGGAAAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATATATATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAATACAAAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCAGTCGTGCGATAATATGCAAAAGAGAAAACTATCCAGTCATGATCATAAATATCCCCCAGCACTGATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGTACAAGATTTTTCTTCTAATACGGCAAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAAAA] consensusID : consensus_3195#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TGCTCAGGCAGAATCNCCACGAGGNGTAGAACGACGAGGCCGTTGTTGCCAATGGCGAGGGAAAAGCGAAATCAAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAACAGGAAGCAAAACAAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCCAAAACGATCAAGCAGAAGGATCTGCGAGTCATGTTCAGCAAGTACGGCACCATACAGACGATTCGTCTTCGCACGAATACGGGTTTGAAAATGTTCAACAAGAAAGTGCTGTCAAAAGTGCCTTCCCTGAACGCGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAGGCCTGTCAGCTGGACGGGGAAATGGTTAGCAACAATCGCATCCGACGTGTGTCCGGCTGACAAGAAGCAGATTGGCGACGCGAAAGCGACCGTCTTCGTGGGAAATATCGCCGAGAGGCGACAACCGATAACGATCTGCACGAATTCTTCAGCCGCGTCGGGCCGGATCGAATACGGTCC] [+] EMBL BX466468 [TGCTCAGGCAGAATCNCCACGAGGNGTAGAACGACGAGGCCGTTGTTGCCAATGGCGAGGGAAAAGCGAAATCAAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAACAGGAAGCAAAACAAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCCAAAACGATCAAGCAGAAGGATCTGCGAGTCATGTTCAGCAAGTACGGCACCATACAGACGATTCGTCTTCGCACGAATACGGGTTTGAAAATGTTCAACAAGAAAGTGCTGTCAAAAGTGCCTTCCCTGAACGCGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAGGCCTGTCAGCTGGACGGGGAAATGGTTAGCAACAATCGCATCCGACGTGTGTCCGGCTGACAAGAAGCAGATTGGCGACGCGAAAGCGACCGTCTTCGTGGGAAATATCGCCGAGAGGCGACAACCGATAACGATCTGCACGAATTCTTCAGCCGCGTCGGGCCGGATCGAATACGGTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3195#1 CCGCCCACGCGTCCGGTT-CTAGACCGCGAGGACGACCGGCGGCGTGA-CGGTGTTTCCA 58 consensus_3195#2 -TGCTCAGGCA---GAAT-CNCCAC-GAGGNGTAGAACGACGAGGC---CGTTGTTGCCA 51 consensus_3195#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGT 60 ** ** ** * * * * * ** * * ** * consensus_3195#1 -TGCCCTTCTAAAGTGGCACTCGGGGAAACGGTGTTTCAATGATGTCAACTGCGCGGCGG 117 consensus_3195#2 ATGGCGAGGGAAAAGCGAAATC----AAAAGCTAAGACCCCGAAGGTAAAGGAGGTTAAA 107 consensus_3195#0 CCGCCCACGCGTCCGCCGAATTCAA-AGAGGCTTTCGCGCTAATGG--ACAACGACAAGG 117 * * * * * * * * * * * * * consensus_3195#1 CGGTAATCAGCCCACGTACACAGACACGTGCGATGTGCGTTGGTCGATGGAAACAGCTGT 177 consensus_3195#2 CAGGAAGCAAAACAAAAGCCAAGAGGAAAGGAATACACCATCTTTGTTGGCAACCTTCCC 167 consensus_3195#0 ATGGTGTCATTGGCAAGAACGATCTCCGCTCCACCTTCGACGCCCTCGGCAAGCTGGTGT 177 * ** * * * * * * consensus_3195#1 GGAAAGGAGAAGAGAAATGGGCAAAGTGAGCTGCAGTACGTAAAATCATATATATATATA 237 consensus_3195#2 AAAACGATCAAGCAGAAGGATCT--GCGAGTCATGTTCAGCAAGTACGGCACCATACAGA 225 consensus_3195#0 CGGACAAGGAGCTGGACGAGATGCTCGGTGAGGCTACGGGACCGCTCAACTTCACCCAGC 237 * * * * * * * * * consensus_3195#1 TATATATATATATATATATATATATACCTACATATATATATTAACATATATAAACACAAT 297 consensus_3195#2 CG-ATTCGTCTTCGCACGAATACGGGTTTGAAAATGTTCAACAAGA-----AAGTGCTGT 279 consensus_3195#0 TGCTGACGCTGTTCGCCAACCGCATGTCGGGTGGTGGCCAGGATGACGA--CGATGTCGT 295 * * * * * consensus_3195#1 ACAAAACGATATGTGGAAAAAGAAAAGAGAAACAGTAAAAACACAGAAGAAAAGTAACCA 357 consensus_3195#2 -CAAAAGTGCCTTCCCTGAACGCGTACGTAGTTTACAACTCCAAGGAGGAAATGGAACAG 338 consensus_3195#0 -CATCAACGCGTTCAAGGCCTTCG-ACACCAACGGCAAGATCGATGGCGAGAAGTTCCGC 353 ** * * * ** * * ** * * * consensus_3195#1 GTCGTGC-GATAATATGCAAAAGAGAAAAC--TATCCAGT-CATGATCATAAATATCCCC 413 consensus_3195#2 GCCTGTC-AGCTGGACGGGGAAATGGTTAG--CAAC-AAT-CGC-ATCCGACGTGTGTCC 392 consensus_3195#0 TTCGCCCTGACCCACTGGGGCCAGGACAAGTTCACCGAGGACGAGGTTGACGATGCATTC 413 * * * * * * * * * * * * consensus_3195#1 CAGC-ACTGATAATGAAGGGTTCTCCCGGCAAGAAAGCTGAAGT----ACAAGATTTTTC 468 consensus_3195#2 G----GCTGACAA-GAAGCAGATTGGCGACGCGAAAGCGACCGTCTTCGTGGGAAATATC 447 consensus_3195#0 GATCAGATGGTCATTGACGATAAGGGCTACATCGACACTGCTGCTCTGATCGGCATGCTC 473 ** * * * * * * * * ** consensus_3195#1 TTCTAATACGGCAAAGTGAATTCGTGTTGAGAGGAGAGACAGTTTTTACCACGTAAGAAA 528 consensus_3195#2 GCCGAGAGGCGACAACCGATAACGATCTGCACGAATTCTTCAGCCGCGTCGGGCCGGATC 507 consensus_3195#0 ACCGGATCCGAGGAGGGAGAGGAAGAATAAATTTTATAATTAAAAGCCAAAAACAAAACC 533 * * * * consensus_3195#1 AA---------------------- 530 consensus_3195#2 GAATACGGTCC------------- 518 consensus_3195#0 AAAAAACTAACCTAAAAAAAATCT 557 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||