These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATTCGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTGTGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTTTATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTCGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCCAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCCCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGACAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTAAACCACTGTGCGAACAAATT] [+] EMBL BX629291 [TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATTCGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTGTGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTTTATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTCGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCCAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCCCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGACAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTAAACCACTGTGCGAACAAATT] [+] EMBL BX629184 [ GGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATTCGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTGTGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTTTATCAAACTTCAGCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTTCGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCCCAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACCCCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGACAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCTAAACCACTG ] consensusID : consensus_3200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [CCGCCCACGCGTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGTCGGCGGTGGCGGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTGGCAGCTACGGCCAGCGCTCCGACCGGGGCAACAACGTCGGCAACGGGCAGCGATCGGTTGGCAACGGCAATGCCATCAGCAACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGCCGGTCTGACCAGGGGGTGGGGGGGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGGATCACCAAGCGCCACCCT] [+] EMBL BM590444 [CCGCCCACGCGTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGTCGGCGGTGGCGGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTGGCAGCTACGGCCAGCGCTCCGACCGGGGCAACAACGTCGGCAACGGGCAGCGATCGGTTGGCAACGGCAATGCCATCAGCAACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGCCGGTCTGACCAGGGGGTGGGGGGGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTCTCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGGGAGTTGGATCACCAAGCGCCACCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3200#0 TGACCAGGGGAGAGGGGGGAGGGGAGGTGGATGTTTGGTGGCAGCCGGCTCGTAGATCTC 60 consensus_3200#1 ------------------------------------------------------------ consensus_3200#0 TCGCTCTCTCTCCCCCTCTCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAACAGG 120 consensus_3200#1 ------------------------------------------------------------ consensus_3200#0 GAGTTGCATCACCAAGCGCCACCCTTTCCCGAGTGCTGGCTGGGAGGGTGGGAGAGAATT 180 consensus_3200#1 --------CCGCCCA-CGC-GTCCGCGGACGCGTGGGCGCAGTATGGGCGGTGGCAATGT 50 * ** * *** ** ** *** ** * *** ** * * * consensus_3200#0 CGATGCTGTGACGTGAACAGGCGGAACGATAGAGCCGCGGAAAGACGTTTTGGTTTATTG 240 consensus_3200#1 CGGCG--GTGGCGGCGGCGGCAGCGGCGGTGGTAACCGGGGCAGCGGCGGTG-------- 100 ** * *** ** * * * ** * * * ** ** * ** consensus_3200#0 TGCGCTCACACTCCTCCCCTCCACCCCGCTCTAACCGCCGTATATCGAGCACACACTGTT 300 consensus_3200#1 -GCAGCTACGGCCAGCGCTCCGACCGGGGCAACAACGTCG-GCAACGGGCAGCGATCGGT 158 ** ** * * * * *** * * ** ** * ** *** * * * consensus_3200#0 TATCAAACTTCA-GCAGCGAACACGTCGAACTGCCTCCGGGCACAACACATTTCGAGTTT 359 consensus_3200#1 TGGCAACGGCAATGCCATCAGCAACCGGGGCTTCGGCTCGGGCTACTAAAACCGGACCGC 218 * *** * ** * ** * ** * * ** * * * ** consensus_3200#0 CGGTGGTGGCGTGACTGTGGTGACATCTTTCTTTGGAGTTGTTACTCTGCCAACACCGCC 419 consensus_3200#1 CGGTCTGACCAGGGGGTGGGGGGGGTGGATGTTTGG---TGGCAGCCGGCTCGTAG-ATC 274 **** * * ** * * * ***** ** * * ** * * consensus_3200#0 CAACACCCCCCAATGGCATCAACACCTCTTCTTTCTCATTCTTTCTGTAACACAATCACC 479 consensus_3200#1 TCTCGCTCTCTCTCCCCCTC--TCTCTCTTCTAGGGGTGTGTTTCCAGGGGCTTGTAGAA 332 * * * * * ** ******* * **** * consensus_3200#0 CCTTGTTTTTGAGCACCACGTGCGTGGCTTGTCTGTGACTTGAACCACGTGGTGTCCAGA 539 consensus_3200#1 CAGGGAGTTGGATCACCAAGCGCCACCCT------------------------------- 361 * * ** ** ***** * ** ** consensus_3200#0 CAAAGTGTGTGGAACTGGAACTGAAACTAGTAAGCTAACGGGCTCAAACCCCGTAGTGCT 599 consensus_3200#1 ------------------------------------------------------------ consensus_3200#0 AAACCACTGTGCGAACAAATT 620 consensus_3200#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||