These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGGTGAGGACTTCGACAACCGTCTGGTGAACCACTTCGCACAGGAATTCAAGCGCAAGCACAAGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCGCGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTCGCTGTTCGAGGGAACCGATTTCTACACCTCGATCACGCGCGCCCGCTTCGAGGAGCTGAACGCCGACCTGTTCCGCTCGACGATGGAGCCGGTCGAGAAGGCGCTGCGCGACGCCAAGATGGACAAGGCGAGCATCCACGACATCGTGCTGGTGGGTGGATCGACGCGCATCCCGAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCCGGACGAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAGTCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTC] [+] EMBL BM588736 [CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGGTGAGGACTTCGACAACCGTCTGGTGAACCACTTCGCACAGGAATTCAAGCGCAAGCACAAGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCGCGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTCGCTGTTCGAGGGAACCGATTTCTACACCTCGATCACGCGCGCCCGCTTCGAGGAGCTGAACGCCGACCTGTTCCGCTCGACGATGGAGCCGGTCGAGAAGGCGCTGCGCGACGCCAAGATGGACAAGGCGAGCATCCACGACATCGTGCTGGTGGGTGGATCGACGCGCATCCCGAAGGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCCGGACGAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAGTCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTC] consensusID : consensus_3212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTGCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCAAATGCCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTTTTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCA] [+] EMBL BM625811 [CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTCACCTGCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCAAATGCCATGTCTTCTGTTCCATTTCCTCCACCGAGCACCCGAGCAGGCAGCAAACGCAAACATGAAGAAAACACACACGCCCCAAAAATCCTCCCAATGCTTTTCCGCGCCAAGTATGCTTTCTTTCATGCCCTTTTAATGCTCCCA] consensusID : consensus_3212#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAAAATCACGTCGTTTCCATCCCCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCAGTTCCTGTTCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCATCCGAAGGTGACGCCCGACCTGCTGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGCTGCAGCTGCAGGAAAAGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCGCAAGGGTACGGCATGACCGAAAGCTCGCCCGTTACGCTCTGCACGCCCCACCGGTACGACCTGTCGAAGGTGGGCACCTGCGGTCAGCTGTATCCCAACACGGAGGCCAAGATTGTGTCGCTGTCGGACGGTAGCAATCTGGGACCGCACCAGACGGGCGAGCTGTACCTGCGGGGGCCACAGATTATGAA] [+] EMBL BM601033 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAAAATCACGTCGTTTCCATCCCCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCAGTTCCTGTTCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCATCCGAAGGTGACGCCCGACCTGCTGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGCTGCAGCTGCAGGAAAAGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCGCAAGGGTACGGCATGACCGAAAGCTCGCCCGTTACGCTCTGCACGCCCCACCGGTACGACCTGTCGAAGGTGGGCACCTGCGGTCAGCTGTATCCCAACACGGAGGCCAAGATTGTGTCGCTGTCGGACGGTAGCAATCTGGGACCGCACCAGACGGGCGAGCTGTACCTGCGGGGGCCACAGATTATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3212#0 ------CCGCGGACGCGTGGGCGAGGTCAAGTCGACCGCCGGAGACACCCATCTGGGCGG 54 consensus_3212#1 CCGCCCACGCGTCCGGGAGGATGACGTCAACCTGGCC-TCGTCCACGCTGATCAGCGAGG 59 consensus_3212#2 ------CCGCGGACGCGTGGGCG--GACGCGTGGGCGGACGCGTGGGAAAATCACGTCGT 52 **** ** * ** * * * * * ** *** * consensus_3212#0 TGAGGACTTCGACAACCGTCTGGTGAACCACT-TCGCACAGGAATTCAAGCGCAAGCACA 113 consensus_3212#1 GCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCA 119 consensus_3212#2 TTCCATCCCCAGATTCATCCCGGAAGACTACATCCAGTGTTTAGCCGAGTTCCGGCCCCA 112 * * * * * * ** consensus_3212#0 AGAAGGATCTGTCCACCAACAAGCGCGCCCTGCGCCGACTGCGCACGGCGTGCGAGCGCG 173 consensus_3212#1 ATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCA-AGCTGATGAACCCA 178 consensus_3212#2 GTTCCTGTTCGTGGTACCGTCGCTGCTCCTCTTCCTAGCCACCCA-----TCCGAAGGTG 167 * * * * ** ** consensus_3212#0 CGAAGCGCACGCTCTCGTCGTCGACGCAGGCGAGCATTGAGATCGATTC-GCTGTTCGAG 232 consensus_3212#1 GCACCTGGAT-CTGTCAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAG 237 consensus_3212#2 ACGCCCG-AC-CTGCTGTCGAGTGTGGATTCCGTGCTGGTCGGCGCTGCGCCGGCCTCGC 225 * * ** ** * * * * * consensus_3212#0 GGAACCGATTTCTACACCTCG---ATCACGC--GCGCCCGCTTCGAGGAGCTGAACGCCG 287 consensus_3212#1 CGTCACCGTTACGAGAACTCGC--ACTACGCCGACGATGACGACAACATCGTGTTCGAAG 295 consensus_3212#2 TGCAGCTGCAGGAAAAGTTCAAAAACAAAGTAGGCCGCGATATCGATATCGCG--CAAGG 283 * * * * ** * * * * * * * * * consensus_3212#0 ACCTGTTCCGCTCGACGATG---GAGCCGGT-CGAGAAGGCGCTGCGCGACGCCAAGATG 343 consensus_3212#1 ACTTTGCCCGCCTGCGGATGAACGAGCCGGAGTAAGCCTGTCCCGCCTGATGCGGCATTC 355 consensus_3212#2 GTACGGCATGACCGAAAGCTCGCCCGTTACGCTCTGCACGCCCCAC-CGGTACGAC-CTG 341 * * * * * * * * * * consensus_3212#0 GACAAGGCGAGCATCCACGACATC--GTGCTGGTGGGTGGA--TCGACGCGCATCCCGAA 399 consensus_3212#1 ACCT--GCAACCATCCTTCACCCCAAGGGCGAACGGCTTTAATCCGGAGAGGGGACAGCA 413 consensus_3212#2 TCGAAGGTGGGCACCT------------GCGGTCAGCTGTATCCCAACACGGAGGCCAAG 389 * ** * ** * * * * * * consensus_3212#0 GGTGCAGAAGCTGCTGCAGGACTTCTTCAACGGCAAGGAGTTGAACAAGTCTATCAACCC 459 consensus_3212#1 AATGCCATGTCTTCTGTTCCATTTCCTCCAC--CGAGCACCCGAGCAGG-CAGCAAACGC 470 consensus_3212#2 ATTGT----GTCGCTGTCGGACGGTAGCAAT--CTGGGACCGCACCAGA-CGGGCGAGCT 442 ** *** * * * * * * * ** * * consensus_3212#0 GGAC--GAGGCCGTCGCGTACGGTGCCGCCGTCCAGGCCGCCATCCTGCACGGCGACAAG 517 consensus_3212#1 AAACATGAAGAAAACACACACGCCCCAAAAATCC---TCCCAATGCTTTTCCGCGCCAAG 527 consensus_3212#2 GTACCTGCGGGGGCCACAGATTATGAA--------------------------------- 469 ** * * * * * consensus_3212#0 TCGGAGGAGGTGCAGGATCTGCTGCTGCTCGACGTGACCCCGCTGTC 564 consensus_3212#1 TATGCTTTCTTTCATGCCCTTTTAATGCTCCCA-------------- 560 consensus_3212#2 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||