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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 875 fasta sequence
[CCGGTTAAGCGCCGTTCGTTAGCAGAGGATAAAATATGTAGCGGATGTCGTCCAGCATCCGACCATAGTATTGAGAAGCAATGTGTAGCGCGCACGCATTGTGCGTGCTTGAGCATAGGGATCCGATAAAAGTAGATAAACGAAAACTAATATACATTTTGTTCAGCCAGTCCCCCGTTGAACGAGACCCGTTAATGAAAATCGTTGTTATTGGTCACTGAGCGCGTAGTGCGAGTAGCAGCAGTGGTTTGTTGCTGTTAACCCCGACCCCCGAGGTGTGTTAAAACGAATTTATTGTCCTCGAATTTCCTCTTCCTTTTGCACTGACTTTCGACTAAGATGGGCGCGCATTGATGATGCCTCGCGCTCGGGACGCCAAATGTAATTACACTTTATTCGCGCATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAACAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCTGCGTGAGCTTTTGAACACGACCACATGTTTTTATTTTTAATAATAATTACTTCGGTTTTCGCTTGCCATGCCCGGAGTGTCTTTCGGAGATTAAAACCAAAAAAAAAAGAAAATACAAGAGCAAAATGGTATCAGGTGTATTTAGTTTTTACCGGTACCGTTTTGGGCGTTGTTTGATTTCCAATTTCGCTACTATCGTTCTGGATGTGTAGTGTCATACGAGTTGAGTTTGATCGTTTGCTACTGCACAATTGTAACCGTGCTCGTGCAGAAGGAGTAAATCTATTGTTATATGGACCTTGCAATGGACGAATTGTTAAAGAACTGTGCGTCCGATCATTATACAAAAGACA]
[+] EMBL BM644002 [CCGGTTAAGCGCCGTTCGTTAGCAGAGGATAAAATATGTAGCGGATGTCGTCCAGCATCCGACCATAGTATTGAGAAGCAATGTGTAGCGCGCACGCATTGTGCGTGCTTGAGCATAGGGATCCGATAAAAGTAGATAAACGAAAACTAATATACATTTTGTTCAGCCAGTCCCCCGTTGAACGAGACCCGTTAATGAAAATCGTTGTTATTGGTCACTGAGCGCGTAGTGCGAGTAGCAGCAGTGGTTTGTTGCTGTTAACCCCGACCCCCGAGGTGTGTTAAAACGAATTTATTGTCCTCGAATTTCCTCTTCCTTTTGCACTGACTTTCGACTAAGATGGGCGCGCATTGATGATGCCTCGCGCTCGGGACGCCAAATGTAATTACACTTTATTCGCGCATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAACAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCTGCGTGAGCTTTTGAACACGACCACATGTTTTTATTTTTAATAATAATTACTTCGGTTTTCGCTTGCCAT ]
[+] EMBL BX611570 [ GTCCTCGAATTTCCTCTTCCTTTTGCACTGACTTTCGACTAAGATGGGCGCGCATTGATGATGCCTCGCGCTCGGGACGCCAAATGTAATTACACTTTATTCGCGCATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAACAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCTGCGTGAGCTTTTGAACACGACCATATGTTTTTATTTGTAATAATAATTACTTCGGTTTTCGGTTGCCATGCCCGGAGTGTCTTTCGGAGATTAAAACCAAAAAAAAAAGAAAATACAAGAGCAAAATGGTATCAGGTGTATTTAGTTTTTACCGGTACCGTTTTGGGCGTTGTTTGATTTCCAATTTCGCTACTATCGTTCTGGATGTGTAGTGTCATACGAGTTGAGTTTGATCGTTTGCTACTGCACAATTGTAACCGTGCTCGTGCAGAAGGAGTAAATCTATTGTTATATGGACCTTGCAATGGACGAATTGTTAAAGAACTGTGCGTCCGATCATTATACAAAAGACA]
consensusID : consensus_3219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 830 fasta sequence
[CCAAGAATTCGGCACGAGGAAAACAGACGCGCGCATAACCACAGCACAGTTTCTCATGTTCTCGCTGATCTGCTAAGTGTCTACCGAACACGGCCAGAGATAAATAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGAAGGCCGAACAAAAAGAAGAGGGCTGCTAGGTAAGCCTTTTGTGCAATAAAATCGGTGGGTGTAGAATTAGGTTTTAGTGGGATAAAAGTAACTATGAAACAAACAAATCCCACCCCACACAAGTACACGTACACACACTCACTATAAAGAGGCCATCGCCGCCCGATCATCGTAACGTGGCGCGCTGTACAGAGAGGGTTAGCTGTTACCCTGGAGCGCTCCGGGTGCGTGTGCAAATGTAAATGTGCTGGCAAAAGGGTGGAGACGATACACTACTTTCCTTCCGCCAAAGGGCGCCATTCGTTACAGCAGCAGCAAATGCTTTAGTAGAAGAAATCGTTCCACAAACACACACACACATCCAGCATACAAACAGTAAAAGCTCACTCGACAACAAGCAAAAACAGTGTAGGCAAAAGGAGATTCGTTGACNGCTGCATCCCGTTCACAGNNTTCCAGTTGGCATGNNTTCCGAAGGAGGAAAAAAGGAAGGACACAGNAGGAGGAGGACTAANATTGGGGTCAAGAGTTTGGCCCAACAGGGAAACTGANAAAAGGCCTTTCCAATCTGGTGCCAGGGGCCGAAAAANTCCNAAGGGAATACCACTTNGGGAAGAGCNCACCAACGCAGANAAGCCGAGCGGCCAGGGAACCANNNTTCTCATTAACGCGCACTCTT]
[+] EMBL BX467568 [CCAAGAATTCGGCACGAGGAAAACAGACGCGCGCATAACCACAGCACAGTTTCTCATGTTCTCGCTGATCTGCTAAGTGTCTACCGAACACGGCCAGAGATAAATAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGAAGGCCGAACAAAAAGAAGAGGGCTGCTAGGTAAGCCTTTTGTGCAATAAAATCGGTGGGTGTAGAATTAGGTTTTAGTGGGATAAAAGTAACTATGAAACAAACAAATCCCACCCCACACAAGTACACGTACACACACTCACTATAAAGAGGCCATCGCCGCCCGATCATCGTAACGTGGCGCGCTGTACAGAGAGGGTTAGCTGTTACCCTGGAGCGCTCCGGGTGCGTGTGCAAATGTAAATGTGCTGGCAAAAGGGTGGAGACGATACACTACTTTCCTTCCGCCAAAGGGCGCCATTCGTTACAGCAGCAGCAAATGCTTTAGTAGAAGAAATCGTTCCACAAACACACACACACATCCAGCATACAAACAGTAAAAGCTCACTCGACAACAAGCAAAAACAGTGTAGGCAAAAGGAGATTCGTTGACNGCTGCATCCCGTTCACAGNNTTCCAGTTGGCATGNNTTCCGAAGGAGGAAAAAAGGAAGGACACAGNAGGAGGAGGACTAANATTGGGGTCAAGAGTTTGGCCCAACAGGGAAACTGANAAAAGGCCTTTCCAATCTGGTGCCAGGGGCCGAAAAANTCCNAAGGGAATACCACTTNGGGAAGAGCNCACCAACGCAGANAAGCCGAGCGGCCAGGGAACCANNNTTCTCATTAACGCGCACTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3219#0 CCGGTTAAGCGCCGTTCGTTAGCAGAGGATAAAATATGTA-GCGGATGTCGTCCAGCATC 59
consensus_3219#1 ----CCAAGA---ATTCGGCACGAGGAAAACAGACGCGCGCATAACCACAGCACAGTTTC 53
*** **** * ** * * * * * *** **
consensus_3219#0 CGACCATAGTATTGAGAAGC--AATGTGTAGCGCGCACGCATTGTGCGTGCTTGAGCATA 117
consensus_3219#1 TCATGTTCTCGCTGATCTGCTAAGTGTCTACCGAACACG-GCCAGAGATAAATAGACAGA 112
* * *** ** * *** ** ** **** * * ** *
consensus_3219#0 GGGATCC-GATAAAAGTAGATAAACGAAAACTAATATACATTTTGTTCAGCCAGTCCC-- 174
consensus_3219#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGGAAGGCCGAACAAAAAGAAGAGG 172
* ** ** * * *** * * * * *** * * ** **
consensus_3219#0 -CCGTTGAACGAGACCCGTTAATGAAAATCGTTGTTATTGGTCACTGAGCGCGTAGTGCG 233
consensus_3219#1 GCTGCTAGGTAAGCCTTTTGTGCAATAAAATCGGTGGGTGTAGAATTAGGTTTTAGTGGG 232
* * * ** * * * ** ** ** * * ** ***** *
consensus_3219#0 AGTAGCAGCAGTGGTTTGTTGCTGTTAACCCCGACCCCCG-AGGTGTGTTAAAACGAATT 292
consensus_3219#1 A-TAAAAGTAACTATGAAACAA-ACAAATCCCACCCCACACAAGTACACGTACACACACT 290
* ** ** * * ** *** *** * * ** * ** * *
consensus_3219#0 TATTGTCCTCGAATT-TCCTCTTCCTTTTGCACTGACTTT-CGACTAAGATGGGCGCGCA 350
consensus_3219#1 CACTATAAAGAGGCCATCGCCGCCCGATCATCGTAACGTGGCGCGCTGTACAGAGAGGGT 350
* * * ** * ** * * ** * ** * * *
consensus_3219#0 TTGATGATGCCTCG---CGCTCGGGACGC-----CAAATGTAATTACACTTTATTCGCGC 402
consensus_3219#1 TAGCTGTTACCCTGGAGCGCTCCGGGTGCGTGTGCAAATGTAAATGTGCTG-GCAAAAGG 409
* * ** * ** * ***** ** ** ********* * ** *
consensus_3219#0 ATTCACCTGGTTGGGTAGTAGTTATTCAACTAAAAATGGAAATTCAAACAACAGAAAAAA 462
consensus_3219#1 GTGGAGACGATACACTACTTTCCTTCCGCCAAAGGGCGCCATTCGTTACAGCAGCAGCAA 469
* * * * ** * * * * ** * * * *** *** * **
consensus_3219#0 CAAAACTAGAAGAGCAATCTAAATAGTCATGCAAGTGTTAAAATATTTGGATTAAGTTCT 522
consensus_3219#1 ATGCTTTAGTAGAAGAAATCGT---TCCACAAACACACACACACATCCAGCATACAAACA 526
*** *** ** ** * * * ** * ** *
consensus_3219#0 GCGTGAGCTT--TTGAACACGACCACATGTTTTTATTTTTAATAATAATTACTTCGGTTT 580
consensus_3219#1 GTAAAAGCTCACTCGACAACAAGCA-AAAACAGTGTAGGCAAAAGGAGATTCGTTGACNG 585
* **** * ** ** * ** * * * ** * * * * * *
consensus_3219#0 TCGCTTGCCATGCCCGGAGTGTCTTTCGGAGATTAAAACCAAAAAAAAAAGAAAATACAA 640
consensus_3219#1 CTGCATCCCGTTCACAGNNTTCCAGTTGGC-ATGNNTTCCGAAGGAGGAAAAAAG----- 639
** * ** * * * * * * * ** ** ** ** * ** ***
consensus_3219#0 GAGCAAAATGGTATCAGGTGTATTTAGTTTTTACCGGTACCGTTTTGGGCGTTGTTTGAT 700
consensus_3219#1 GAAGGACACAGNAGGAGGAGGACTAANATTGGG--------GTCAAGAGTTTGGCCCAAC 691
** * * * * *** * * * * ** ** * * * * *
consensus_3219#0 TTCCAATTTCGCTACTATCGTTCTGGATGTGTAGTGTCATACGAGTTGAGTTTGATCGTT 760
consensus_3219#1 AGGGAAACTGANAAAAGGCCTTTCCAATCTG--GTGCCAGGGGCCGAAAAANTCCNAAGG 749
** * * * ** ** ** *** ** * * *
consensus_3219#0 TGCTACTGCACAATTGTAACCGTGCTCGTGCAGAAGGAGTAAATCTATTGTTATATGGAC 820
consensus_3219#1 GAATACCACTTNGGGAAGAGCNCACCAACGCAGANAAGCCGAGCGGCCAGGGAACCANNN 809
*** * * * * ***** * * *
consensus_3219#0 CTTGCAATGG-ACGAATTGTTAAAGAACTGTGCGTCCGATCATTATACAAAAGACA 875
consensus_3219#1 TTCTCATTAACGCGCACTCTT----------------------------------- 830
* ** * ** * * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||