cluster # 3220

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Anopheles gambiae
cluster # 3220 cluster # 3220 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3220#0 length = 680 sequences # 2

consensus_3220#1 length = 406 sequences # 1

consensusID : consensus_3220#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 680
fasta sequence

                              [CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTGCTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTTCGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCAACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTTACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCATCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTGCTCCCGAGTGTACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTCTGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCTTGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACCGCGGTATTCTGAAGCGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGAAACGATCACAAAACTCATGG]

[+] EMBL BM627785             [CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTGCTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTTCGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCAACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTTACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCATCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTGCTCCCGAGTGTACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTCTGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCTTGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACCGCGGTATTCTGAAGCGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGAAACGATCACAAAACTCATGG]
[-] EMBL BX618946             [                                                                                                                                                                                                                                                                    ATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCATCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTGCTCCCGAGTGTACCGCTCTGACCGTAACGCACATGTACCATACGCCCCGCCGCTCCTCTGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGTGGACGATCGCGATGTTCACGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCTTGGCCCGAATGCGGTAGACTCGACAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACCGCGGTATTCTGAAGCGCGGACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGAAACG                ]




>consensus_3220#0
CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTG
CTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTT
CGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCA
ACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTT
ACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCA
TCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTG
CTCCCGAGTGTACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTCTG
TGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAATG
CTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAGCT
TGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAACC
GCGGTATTCTGAAGCGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCCTGA
AACGATCACAAAACTCATGG

consensusID : consensus_3220#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence

                              [GGCGAACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCGAACCAACAACATTTTTCTTCACCACATGGTGACCGTAACAGTATAAACAAGTGCGCGTAAGCAATTGTCATATCGACTCAAATAAGTGCAACAAAAACAAAAAAGTTTCCTATTCGAAGCGCTTATGGGCCTGACGCGGTCTATCGCGATGTTCATGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGAATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGGCGACCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGTGCCTGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG]

[+] EMBL BX619175             [GGCGAACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCGAACCAACAACATTTTTCTTCACCACATGGTGACCGTAACAGTATAAACAAGTGCGCGTAAGCAATTGTCATATCGACTCAAATAAGTGCAACAAAAACAAAAAAGTTTCCTATTCGAAGCGCTTATGGGCCTGACGCGGTCTATCGCGATGTTCATGAATGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGAATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGGCGACCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGTGCCTGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG]




>consensus_3220#1
GGCGAACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCGAAC
CAACAACATTTTTCTTCACCACATGGTGACCGTAACAGTATAAACAAGTGCGCGTAAGCA
ATTGTCATATCGACTCAAATAAGTGCAACAAAAACAAAAAAGTTTCCTATTCGAAGCGCT
TATGGGCCTGACGCGGTCTATCGCGATGTTCATGAATGCTCGCTGTCTCATCAAAGTTCC
GGGATCCAGTTGAATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGG
CGACCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGT
GCCTGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3220#0      CCGTGCTAAAATCTACTTCTGTTTTCCCACCTCTCACGTCTAATACGGCCAATTACGTTG 60
consensus_3220#1      ------------------------------------------------------------
                                                                                  

consensus_3220#0      CTGGCCCTTTGTAAATACCCTTTGCGTACCTGCCGTGGCTCGTCTGACTTGTACATCTTT 120
consensus_3220#1      ------------------------------------------------------------
                                                                                  

consensus_3220#0      CGCATAAACTACGGATTCCACCCACCCATTAGGCCGAAGTTACGTGGTAAGTATTCATCA 180
consensus_3220#1      ------------------------------------------------------------
                                                                                  

consensus_3220#0      ACAACTATCGTCTTCATCGATCGGCCGGGAGGCTGGCCGACACTGTTAAACGGCCACTTT 240
consensus_3220#1      ------------------------------------------------------------
                                                                                  

consensus_3220#0      ACGCCGGAACGAAGAACTCCATCATAGGCGCTTCGTAGTCAACCTCGGCAACCCCTTCCA 300
consensus_3220#1      --GGCG-AACTCAGTGCTAACTCAACTCTGCGACCAGGCCTATGACGCGAACCCGTATCG 57
                        * ** ***  **  **   ***     **  *   * * *   **  ***** *  * 

consensus_3220#0      TCAACTCGCGGGCTGCTTCCGCACTGTTTGTTCCGTGGCCGGTGGAGAGTGACGGCGCTG 360
consensus_3220#1      --AACCAACAACATTTTTCTTCACCACATG----GTGACCGTAACAGTATAAACAAG-TG 110
                        ***   *    *  ***  ***    **    *** ***    **  * *    * **

consensus_3220#0      CTCCCGAGTG--TACCGCTCTGACCGTAACGTACATGTACCATACGCCCCGCCGCTTCTC 418
consensus_3220#1      CGCGTAAGCAATTGTCATATCGACTCAAA--TAAGTGCAACAAAAACAAAAAAGTTTC-C 167
                      * *   **    *  *     ***   **  **  ** * ** *  *      * *** *

consensus_3220#0      TGTGCGTCGTCCTATCGAAGCGCTTATAGGCCTGACGAGGACGATCGCGATGTTCACGAA 478
consensus_3220#1      TAT-----------TCGAAGCGCTTATGGGCCTGACGCGGTCTATCGCGATGTTCATGAA 216
                      * *           ************* ********* ** * ************* ***

consensus_3220#0      TGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGACTTTCCTTCATCGGGGGATCGAG 538
consensus_3220#1      TGCTCGCTGTCTCATCAAAGTTCCGGGATCCAGTTGA----------------------- 253
                      *************************************                       

consensus_3220#0      CTTGGCCCGAATGCGGTAGACTCGATAGGCTTGGGAGGCATCCGCACACGTTTTCGGCAA 598
consensus_3220#1      ----------ATGCGGTAGATCCGACAGGCTTGGGTGGCATCCGCACACGTTTTCGGCGA 303
                                **********  *** ********* ********************** *

consensus_3220#0      CCGCGGTATTCTGAAG-CGCGAACGGACTTCGTTGATGATAGGAATATCGTTGCGGTGCC 657
consensus_3220#1      CCGCGGTATTCTGAANGCGCGGACGGACTTTGTTGATAATCGAAATATATTTGCGGTGCC 363
                      ***************  **** ******** ****** ** * *****  **********

consensus_3220#0      TGAAACGATCACAAAACTCATGG-------------------- 680
consensus_3220#1      TGAAACGATCACAAAACTCNTGGATTAATATAAATGTACCACG 406
                      ******************* ***