Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3221 cluster # 3221       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3221#0 length = 677 sequences # 1  
consensus_3221#1 length = 502 sequences # 1  
consensus_3221#2 length = 185 sequences # 1  

consensusID : consensus_3221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGAGCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTGCAATCCATCCGTACTGC]

[+] EMBL BM598367             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGAGCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTGCAATCCATCCGTACTGC]


>consensus_3221#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGA GCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAA AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT CGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTG CAATCCATCCGTACTGC



consensusID : consensus_3221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence
                              [CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGG]

[+] EMBL BM649974             [CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGG]


>consensus_3221#1 CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCA TTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCA ACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAG CCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAA AGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCC GTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGT TGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGC TGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCC TCCAGTTTTCGCTCACGTTCGG



consensusID : consensus_3221#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence
                              [CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCAGCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCGACGCA]

[+] EMBL CNS095DC             [CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCAGCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCGACGCA]


>consensus_3221#2 CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACG TTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCA GCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCG ACGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3221#0      CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGA 60
consensus_3221#1      ------------------------------------------------------------
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAA 120
consensus_3221#1      -----------------------------------------CCGCCCACGCGTCCGAGAA 19
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG 180
consensus_3221#1      AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG 79
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA 240
consensus_3221#1      CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA 139
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA 300
consensus_3221#1      GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA 199
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA 360
consensus_3221#1      GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA 259
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG 420
consensus_3221#1      GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG 319
consensus_3221#2      -----------------------CCAGCGTTGAACTGTTCCTCCACT-GCAGGTTCGTTC 36
                                               *****  ** *** **    *  * **** *  * 

consensus_3221#0      TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG 480
consensus_3221#1      TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG 379
consensus_3221#2      TTGGC--GTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCT 94
                      *  **  *  **    **  *  **   ** * *  * ** *   **** ****      

consensus_3221#0      CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC 540
consensus_3221#1      CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC 439
consensus_3221#2      CAACACATCC--TCCTCGCCGGCCTTCAGCTC----GC-GCTTCTTGCCATGCGGCAGCA 147
                      ****  *  *  * ***  * * *  ***       ** *** ** *  **   * *   

consensus_3221#0      GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT 600
consensus_3221#1      GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT 499
consensus_3221#2      GGTAGTGGCTCTCGTC-CCCCTGCCGGAAGGGCGACGCA--------------------- 185
                      * *  ** *    * * *  ***       **   **                       

consensus_3221#0      CGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTG 660
consensus_3221#1      CGG--------------------------------------------------------- 502
consensus_3221#2      ------------------------------------------------------------
                                                                                  

consensus_3221#0      CAATCCATCCGTACTGC 677
consensus_3221#1      -----------------
consensus_3221#2      -----------------
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)