These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGAGCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTGCAATCCATCCGTACTGC] [+] EMBL BM598367 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGAGCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTGCAATCCATCCGTACTGC] consensusID : consensus_3221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGG] [+] EMBL BM649974 [CCGCCCACGCGTCCGAGAAAATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGGCCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGAGGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAAGGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCAGGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTGTCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAGCAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAACGATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTTCGG] consensusID : consensus_3221#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 185 fasta sequence [CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCAGCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCGACGCA] [+] EMBL CNS095DC [CCAGCGTTGAACTGTTCCTCCACTGCAGGTTCGTTCTTGGCGTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCTCAACACATCCTCCTCGCCGGCCTTCAGCTCGCGCTTCTTGCCATGCGGCAGCAGGTAGTGGCTCTCGTCCCCCTGCCGGAAGGGCGACGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3221#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGACGATGATAATGGAATGGA 60 consensus_3221#1 ------------------------------------------------------------ consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 GCTATTGGTGCACAACAAGATCATCAGTTTGGATCTACCAGTTAAGGAGGTGTACAAGAA 120 consensus_3221#1 -----------------------------------------CCGCCCACGCGTCCGAGAA 19 consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG 180 consensus_3221#1 AATATGGCTCCAGGAAGGCGGCGAGAGAGACAGTATGCGCATTGTGTATCGTATGCGCGG 79 consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA 240 consensus_3221#1 CCTGCTAGGTGACGCGACCGAGGAATTCATCGAAACACTCAACGCCAAGAGCCAAGAGGA 139 consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA 300 consensus_3221#1 GGTGGACAACGAACAGTTGTACCGTATGGCAAACGTATTAGCCGATTGTGGAGGACTCAA 199 consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA 360 consensus_3221#1 GGTCATGCTGGAACGCATCGGAAGTTTGCAGAACGTGTCAAAGTCACGTACCCTGTTGCA 259 consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG 420 consensus_3221#1 GGTTCTGTTGAAATTGTTCCTGCTAAGCGTGAAAGTGTCCCGTTGCCAGGAGGTGCTCTG 319 consensus_3221#2 -----------------------CCAGCGTTGAACTGTTCCTCCACT-GCAGGTTCGTTC 36 ***** ** *** ** * * **** * * consensus_3221#0 TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG 480 consensus_3221#1 TCAGCCAGAACTGAGCGCAATCAACACGCTCCTGAAGGTGTTGCAGCTGTGCTTGCAAAG 379 consensus_3221#2 TTGGC--GTTCTTCTGGCGCTTGACGTTCTTCCGCGGTTGCTCTTGCTGCGCTTCTTGCT 94 * ** * ** ** * ** ** * * * ** * **** **** consensus_3221#0 CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC 540 consensus_3221#1 CAACGAAAGCGATGCTCAGCAGTCGGCAGTAACAGAGCAGCTGCTAGAGATTATGGAAAC 439 consensus_3221#2 CAACACATCC--TCCTCGCCGGCCTTCAGCTC----GC-GCTTCTTGCCATGCGGCAGCA 147 **** * * * *** * * * *** ** *** ** * ** * * consensus_3221#0 GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT 600 consensus_3221#1 GATTCTGTCCAAGGCCGCTTCTGATACGTTGGATTCGTTCCTCCAGTTTTCGCTCACGTT 499 consensus_3221#2 GGTAGTGGCTCTCGTC-CCCCTGCCGGAAGGGCGACGCA--------------------- 185 * * ** * * * * *** ** ** consensus_3221#0 CGGCGGACCGGAGTACGTACAGGCGCTACTATCTTGCACACACTGCTCGAATGTCCGGTG 660 consensus_3221#1 CGG--------------------------------------------------------- 502 consensus_3221#2 ------------------------------------------------------------ consensus_3221#0 CAATCCATCCGTACTGC 677 consensus_3221#1 ----------------- consensus_3221#2 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||