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Anopheles gambiae
cluster # 3224 cluster # 3224       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3224#0 length = 865 sequences # 2  
consensus_3224#1 length = 797 sequences # 1  

consensusID : consensus_3224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 865
fasta sequence
                              [TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGCTCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCATTTTGGAGACGCTA-CCTACCTTCGGTGCTCTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCATAATGAAAGCGCATACTTTG]

[+] EMBL CNS093SR             [TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGCTCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCATTTTGGAGACGCTA CCTACCTTCGGTGCTCTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCATAATGAAAGCGCATACTTTG]
[-] EMBL CNS093SS             [                                                                                                                                                                                                                                                                                                 gtTTTTATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCCTA CTTCGGTGCTTTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGGGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACCCCGCCTAAAGTGTCCGCATt                                                                                                                                                                                                                                                         ]


>consensus_3224#0 TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGC TCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATT TTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACC AAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAA TTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAA TCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAA CGATGCCAATTAGCATTTTGGAGACGCTACCTACCTTCGGTGCTCTCAGTAGCTTCCGGG AAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGAC GGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAA GTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGA CTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACG GGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACA CCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAG CCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGC ACGCATAATGAAAGCGCATACTTTG



consensusID : consensus_3224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence
                              [GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGGATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTATCAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCATATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCGTACCAATTGATTTTAGC]

[+] EMBL BX467876             [GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGGATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTATCAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCATATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCGTACCAATTGATTTTAGC]


>consensus_3224#1 GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTAT CACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGG ATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTG GATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAA AACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGAC ACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTAT CAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGT TACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAA ACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAAC ATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCAT ATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAA CGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGA CTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCG TACCAATTGATTTTAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3224#0      TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGC 60
consensus_3224#1      -----GGCCAAGAATCG----GCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGT 51
                           * ** **  **     ** **    *      * * * *** ***     ** * 

consensus_3224#0      TCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATT 120
consensus_3224#1      TTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAG-------- 103
                      *  *   *    *    *** * ***  * * *  *   ** * *   *           

consensus_3224#0      TTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACC 180
consensus_3224#1      CTGCTTTGGATCGCGGGATTGTACTAAAGTTTA--TGTTTCAAAATTTTAGCAAACGGCA 161
                       *** * * **   ** *    **    ** *   ** **       ** * **  * * 

consensus_3224#0      AAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAA 240
consensus_3224#1      AAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTG 221
                      ** *  **     *    * * *        * *    ****  ****       **   

consensus_3224#0      TTCGTAGACCGTCGTAGGACCCACAGAAGCGAAA-GCGT-TTGCCAAGGATGCTTTCATT 298
consensus_3224#1      TTT--------CCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAA 273
                      **          *    **** *   ** * *   *  * *** ***  **  ** *   

consensus_3224#0      AATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAAC-CGT 357
consensus_3224#1      GATTCAAAACT----TTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACAT 329
                       **  * ***     **     ** * ** *   **  ***  ****  *   *** * *

consensus_3224#0      AAACGATGCCAATTAGCATTTTGGAGACGCTACCTACCTTCGGTGCTCTCAGTAGCTTCC 417
consensus_3224#1      CGTCCCCGGTG-TCGACAAACTGGCAA-ATTATCAAGCACGAGGCGTAGCAGGAGTCTCA 387
                         *   *    *   **   ***  *   ** * * *    *   *  *** **  ** 

consensus_3224#0      GGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATT 477
consensus_3224#1      TTACTTCTTAAAGCGGAAG--GAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACA 445
                            *  *** ***     * *  **  *  *** * *    * * * *    ***  

consensus_3224#0      GACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCA 537
consensus_3224#1      TTCACGATA-CGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATT 504
                        *   *   *    *  **       ** *  *         *     * *   **   

consensus_3224#0      TAAGTTCTACTCTCCGGTCAG--GGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTAC 595
consensus_3224#1      TATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGAT---------AGTGAT 555
                      ** **  * **    * ****  ***  * * ****** * *            *   * 

consensus_3224#0      ACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGG 655
consensus_3224#1      GATGATCTGAAAGACGAAATAT-GTCA--TATCAACCATAC-TCTTCATATATGTGCAAG 611
                         **    *  * *   **** ****   *   *  *  *  *  *   ***      *

consensus_3224#0      GGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCG-GAACG 714
consensus_3224#1      TGGAGTGCAACC-TTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACC 670
                       *  * * ** *   *   * **  *      ** *     **** **  ***  **** 

consensus_3224#0      ACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGAT-GTATTATTTGTCATT 773
consensus_3224#1      TTAGCAA-GAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGA 729
                        * **  *       *** *  *     * * * * **      * ** * *  ***  

consensus_3224#0      TGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACAC 833
consensus_3224#1      T--TCAGACGATACAACA---TTGAATGA-GAATAGCATTCAA--AACGATTANAATCGT 781
                      *   *** ** *  ** *   *  ** **  **  * **** *   ** * *   * *  

consensus_3224#0      ATTTAGCACGCATAATGAAAGCGCATACTTTG 865
consensus_3224#1      ACCAATTGATTTTAGC---------------- 797
                      *   *       **                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)