These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 865 fasta sequence [TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGCTCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCATTTTGGAGACGCTA-CCTACCTTCGGTGCTCTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCATAATGAAAGCGCATACTTTG] [+] EMBL CNS093SR [TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGCTCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATTTTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACCAAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAATTCGTAGACCGTCGTAGGACCCACAGAAGCGAAAGCGTTTGCCAAGGATGCTTTCATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCATTTTGGAGACGCTA CCTACCTTCGGTGCTCTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGGGGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCGGAACGACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGATGTATTATTTGTCATTTGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACACATTTAGCACGCATAATGAAAGCGCATACTTTG] [-] EMBL CNS093SS [ gtTTTTATTAATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAACCGTAAACGATGCCAATTAGCAATTGGGAGACGCTACCCTA CTTCGGTGCTTTCAGTAGCTTCCGGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATTGACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGGGGAATACCGGACCAAGCAGCATAAGTTCTACTCTCCGGTCAGGGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTACCCCGCCTAAAGTGTCCGCATt ] consensusID : consensus_3224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGGATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTATCAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCATATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCGTACCAATTGATTTTAGC] [+] EMBL BX467876 [GGCCAAGAATCGGCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGTTTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAGCTGCTTTGGATCGCGGGATTGTACTAAAGTTTATGTTTCAAAATTTTAGCAAACGGCAAAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTGTTTCCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAAGATTCAAAACTTTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACATCGTCCCCGGTGTCGACAAACTGGCAAATTATCAAGCACGAGGCGTAGCAGGAGTCTCATTACTTCTTAAAGCGGAAGGAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACATTCACGATACGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATTTATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGATAGTGATGATGATCTGAAAGACGAAATATGTCATATCAACCATACTCTTCATATATGTGCAAGTGGAGTGCAACCTTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACCTTAGCAAGAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGATTCAGACGATACAACATTGAATGAGAATAGCATTCAAAACGATTANAATCGTACCAATTGATTTTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3224#0 TGTTCGACCCAGCTTCATGGTGCCCGGGAACTCTCGTTTACCTTGAACAAATTAGAGTGC 60 consensus_3224#1 -----GGCCAAGAATCG----GCACGATGGCAGGACGTAAACGTGATCAACNGGAAGCGT 51 * ** ** ** ** ** * * * * *** *** ** * consensus_3224#0 TCAAAGCAGGCTAGTTCAAAGCGTCCGGTCCTCCGGGGCCGGCGTTGGCCGAGAATAATT 120 consensus_3224#1 TTCACTTATCACAAAAAAAATCTTCCAATTCACATGATGCGTCTTCAACAAG-------- 103 * * * * *** * *** * * * * ** * * * consensus_3224#0 TTGCATGGAATAATGGAACATGACCTCGGTCTGAGTGGTTTCGTTGGTTTGTAATAGACC 180 consensus_3224#1 CTGCTTTGGATCGCGGGATTGTACTAAAGTTTA--TGTTTCAAAATTTTAGCAAACGGCA 161 *** * * ** ** * ** ** * ** ** ** * ** * * consensus_3224#0 AAGAGGTAATGATTAACAGAAGTAGTCGGGGGCATTGGTATTACGGCGCGAGAGGTGAAA 240 consensus_3224#1 AAAAAATACATCCTTTTTGGATTTTAAAACTGAAAAAATATTTTGGCGTATCGAATGGTG 221 ** * ** * * * * * * **** **** ** consensus_3224#0 TTCGTAGACCGTCGTAGGACCCACAGAAGCGAAA-GCGT-TTGCCAAGGATGCTTTCATT 298 consensus_3224#1 TTT--------CCCCCAGACCAATGAAAACTATGTGTATATTGACAAACATATTTGCGAA 273 ** * **** * ** * * * * *** *** ** ** * consensus_3224#0 AATCAAGAACGAAAGTTAGAGGATCGAAGGCGATTAGATACCGCCCTAGTTCTAAC-CGT 357 consensus_3224#1 GATTCAAAACT----TTGTGACATAGTAGACACATATTTACAACCCTCATCGAAACACAT 329 ** * *** ** ** * ** * ** *** **** * *** * * consensus_3224#0 AAACGATGCCAATTAGCATTTTGGAGACGCTACCTACCTTCGGTGCTCTCAGTAGCTTCC 417 consensus_3224#1 CGTCCCCGGTG-TCGACAAACTGGCAA-ATTATCAAGCACGAGGCGTAGCAGGAGTCTCA 387 * * * ** *** * ** * * * * * *** ** ** consensus_3224#0 GGGAAACCAAAATCGGGTTCCGGGGGAAGTATGGTTGCAAAGTTGAAACTTAAAGGAATT 477 consensus_3224#1 TTACTTCTTAAAGCGGAAG--GAGTTAAACAAAGTTACGATCGAGTATCATTGCTGAACA 445 * *** *** * * ** * *** * * * * * * *** consensus_3224#0 GACGGAAGGGCACCACAAGAACAACCCCGAGCCATGGGAGGAATACCGGACCAAGCAGCA 537 consensus_3224#1 TTCACGATA-CGTTGCGCGATTCTTTACGGGGTAAAACTATTGTGGAATATCCGACAATT 504 * * * * ** ** * * * * * ** consensus_3224#0 TAAGTTCTACTCTCCGGTCAG--GGATTACTCCAACATTAGCAGCCCGGCCCCGAAGTAC 595 consensus_3224#1 TATGTGGTGCTTAATGATCAGCTGGACCAGTTCAACATCATCGAT---------AGTGAT 555 ** ** * ** * **** *** * * ****** * * * * consensus_3224#0 ACCGACTAAAGTGTCAGCATATTGTCAGCCACTGAAGAGGCGCCACCGGCTATAGAATGG 655 consensus_3224#1 GATGATCTGAAAGACGAAATAT-GTCA--TATCAACCATAC-TCTTCATATATGTGCAAG 611 ** * * * **** **** * * * * * * *** * consensus_3224#0 GGACGGGGAATCACCACTCTAATATATACCCTAGCATCAATAAAACTGGCCGCG-GAACG 714 consensus_3224#1 TGGAGTGCAACC-TTATAATGATGGAAGTTTGAGTAATGCGAAAAATGAACGCAAGAACC 670 * * * ** * * * ** * ** * **** ** *** **** consensus_3224#0 ACAACACCGGACGCCCATTCTCCCTCCCCTATAGTAGTGCAGAT-GTATTATTTGTCATT 773 consensus_3224#1 TTAGCAA-GAGGATAAATTTTTTCCAGTTTTTGGAAATGTTCGCAGAATGACTCTTCAGA 729 * ** * *** * * * * * * ** * ** * * *** consensus_3224#0 TGAGCAGCCGCTGGAAAAGACTCAAAGGATAAACGGAATTCGATCGACTAATTGGAACAC 833 consensus_3224#1 T--TCAGACGATACAACA---TTGAATGA-GAATAGCATTCAA--AACGATTANAATCGT 781 * *** ** * ** * * ** ** ** * **** * ** * * * * consensus_3224#0 ATTTAGCACGCATAATGAAAGCGCATACTTTG 865 consensus_3224#1 ACCAATTGATTTTAGC---------------- 797 * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||