These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 970 fasta sequence [AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATA-TGACCGCCGTCA-CGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGA-GACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTT-CCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCGGG] [+] EMBL CNS09JK7 [AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATA TGACCGCCGTCA CGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGA GACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTT CCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCGGG] [+] EMBL CNS095GY [ TATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATACTGACCGCCGTCAGCGCAGCTTGGTCAACAAACCCTCCACGTCTGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGACGACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTAAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTTATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTTCCCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTTACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATAATCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAAC ] consensusID : consensus_3226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCTCGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAGGGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCGCACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTACCCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC] [+] EMBL BM651561 [CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCTCGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAGGGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCGCACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTACCCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3226#0 AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAAC 60 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGA 120 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CTCCTACTTGATATGACCGCCGTCACGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAG 180 consensus_3226#1 -----CCGTTCTCTTACGTCAGGTACAAAATTTC-TCTACGAG----CCGCGCCTGG-AC 49 * * * * ** * * ** * ** ** ** * ** ** * ** * consensus_3226#0 TATGGATCC--AGCTTGTCTGACAGGAGGATCTTCGATGGAGACAATTTCGATACGGGGC 238 consensus_3226#1 CAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGC 109 * * * * ** * *** * * * * * * *** * ** * ** consensus_3226#0 GTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTC 298 consensus_3226#1 CCAATGCCG---CTCGCGTTGTTCA-TGCC-GTTTTGCAATCGTTTTTTTTTTTTTTTTT 164 ** * * * * *** *** **** **** *** ** *** ** consensus_3226#0 ATGATGT--TGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTA 356 consensus_3226#1 ATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGT------GCTGGTCGGA-------G 211 ** *** * *** * ** ** *** * ** *** * consensus_3226#0 CTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTA 416 consensus_3226#1 GCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGG------ 265 ***** * * * * * * **** * ** * *** consensus_3226#0 ATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAG 476 consensus_3226#1 AGGTG-CACCCACCGGAGCTGCCATGGAACCATAAGGG---TATGCTCGA-CTCGCTCGA 320 * ** * ** * * ** * ** * *** * ** * * ** * * consensus_3226#0 CGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCA 536 consensus_3226#1 CCACG--CGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGT-GTGTGCGGCCTGCCA 377 * * * ** * * * * * * * * * * * * * * ** consensus_3226#0 CTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTT------CGAAACATGAA 590 consensus_3226#1 CTCGATGCGCTTCATCGCCTACCGCAA-TCTGGTCGGCGTGTCGCACACCGAGGCGGAAG 436 ** *** ***** ** ** ** * * *** * * * * *** * * consensus_3226#0 T--AGGCTGAAGAAGATCAAACTCCTTGCCTGCTACC-TCTACATGTATTCCACGATCTG 647 consensus_3226#1 CGAAGGCCGAGGCGGAGGAGA-TCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTAC 495 **** ** * ** * * *** * ** ** ** * * * * consensus_3226#0 CCCCCATGGCAAGG---GCCGTACGGAGTACTTCCTGGGATTGAGAAGGACCAACCGAAA 704 consensus_3226#1 TTCATGCGGCCCGGCAAGCTGTCCG-ACTATTTCCCGAGCCCGTACCCGAACGAG-GAAG 553 * *** ** ** ** ** * ** **** * * * ** * * *** consensus_3226#0 CAACCACCACC-TCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCA 763 consensus_3226#1 CGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCAC 613 * ** * ** ** ** * * ** * * ** * * * consensus_3226#0 ATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCC 823 consensus_3226#1 GTCACGGTGGCGAGGACTATC---TGTTCGCGCTGCTCACCGGC---------------- 654 * * ** ** ** * * * *** * * consensus_3226#0 GGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGG 883 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 GACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGG 943 consensus_3226#1 ------------------------------------------------------------ consensus_3226#0 CCAACAGTGCTCGAGGAATTCCGCGGG 970 consensus_3226#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||