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Anopheles gambiae
cluster # 3226 cluster # 3226       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3226#0 length = 970 sequences # 2  
consensus_3226#1 length = 654 sequences # 1  

consensusID : consensus_3226#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 970
fasta sequence
                              [AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATA-TGACCGCCGTCA-CGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGA-GACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTT-CCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCGGG]

[+] EMBL CNS09JK7             [AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATA TGACCGCCGTCA CGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGA GACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTT CCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCGGG]
[+] EMBL CNS095GY             [    TATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAACCTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGACTCCTACTTGATACTGACCGCCGTCAGCGCAGCTTGGTCAACAAACCCTCCACGTCTGGCAGTATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGACGACAATTTCGATACGGGGCGTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCATGATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTAAGCACTAACTACTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGCAGTTATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAGAAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAGGGCCGTACGGAGTACTTCCCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTTACAACACCGGATTTGTCCGGCTTAACGCGAATCTTCACGGCATAATCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAAC                      ]


>consensus_3226#0 AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAAC CTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGA CTCCTACTTGATATGACCGCCGTCACGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAG TATGGATCCAGCTTGTCTGACAGGAGGATCTTCGATGGAGACAATTTCGATACGGGGCGT TGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTCAT GATGTTGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTACTGC CGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTAATGT ATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAGCGGC AGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCACTAG ATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTTCGAAACATGAATAGGCTGAAG AAGATCAAACTCCTTGCCTGCTACCTCTACATGTATTCCACGATCTGCCCCCATGGCAAG GGCCGTACGGAGTACTTCCTGGGATTGAGAAGGACCAACCGAAACAACCACCACCTCAGT GGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCAATTTCATCAAAAGGGTT CATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCCGGCTTAACGCGAATCTT CACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGGGACATGGTGAAATTTCT TTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGGCCAACAGTGCTCGAGGA ATTCCGCGGG



consensusID : consensus_3226#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence
                              [CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCTCGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAGGGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCGCACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTACCCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC]

[+] EMBL BM651561             [CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCTCGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAGGGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCGCACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTACCCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC]


>consensus_3226#1 CCGTTCTCTTACGTCAGGTACAAAATTTCTCTACGAGCCGCGCCTGGACCAAGAACCAGA AGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGCCCAATGCCGCT CGCGTTGTTCATGCCGTTTTGCAATCGTTTTTTTTTTTTTTTTTATTGTGTGTTTAACAG GTTGCCACCGCTGCCGGTGTGCTGGTCGGAGGCGCCGGAGCGCTTCTGTACGCGCTCGAA CAATCGGTGTCCGCTTCCGGTACGGAGGTGCACCCACCGGAGCTGCCATGGAACCATAAG GGTATGCTCGACTCGCTCGACCACGCGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAG GTGTGTGCGGCCTGCCACTCGATGCGCTTCATCGCCTACCGCAATCTGGTCGGCGTGTCG CACACCGAGGCGGAAGCGAAGGCCGAGGCGGAGGAGATCCAGGTGCGCGACGGTCCGGAC GAGGCGGGCAACTACTTCATGCGGCCCGGCAAGCTGTCCGACTATTTCCCGAGCCCGTAC CCGAACGAGGAAGCGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTAC ATTGCGCTCGCACGTCACGGTGGCGAGGACTATCTGTTCGCGCTGCTCACCGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3226#0      AAACTATAGCAGTTTAATTTTTATTCTCAATTTGATTGACAAGCTAATAACCCCCAAAAC 60
consensus_3226#1      ------------------------------------------------------------
                                                                                  

consensus_3226#0      CTTGAAACATTACTACCTCGGCAACATTCACTGTGAAGTTTACCTAAATCCACTCAGAGA 120
consensus_3226#1      ------------------------------------------------------------
                                                                                  

consensus_3226#0      CTCCTACTTGATATGACCGCCGTCACGCAGCTTGGTCAACAAAGTGTCCACGTCCGGCAG 180
consensus_3226#1      -----CCGTTCTCTTACGTCAGGTACAAAATTTC-TCTACGAG----CCGCGCCTGG-AC 49
                            * *  * * **  * *  **  *  **  ** ** *     ** ** * ** * 

consensus_3226#0      TATGGATCC--AGCTTGTCTGACAGGAGGATCTTCGATGGAGACAATTTCGATACGGGGC 238
consensus_3226#1      CAAGAACCAGAAGGTATGTGGACTGCCCGTTTCGCAACGTCAACACTCTCAACCACCTGC 109
                       * * * *   ** *     *** *   * *   * * *   *** * ** *      **

consensus_3226#0      GTTGTGTCAACTCCCAAATCTTTCGGTGCAAGTTTCTTTATCGGTTTCTTCTTTGCCTTC 298
consensus_3226#1      CCAATGCCG---CTCGCGTTGTTCA-TGCC-GTTTTGCAATCGTTTTTTTTTTTTTTTTT 164
                          ** *    * *   *  ***  ***  ****    **** *** ** ***   ** 

consensus_3226#0      ATGATGT--TGGGAAGGGTAGCATAGCGTGGGGTATTTAGACGCAAGTCAGCACTAACTA 356
consensus_3226#1      ATTGTGTGTTTAACAGGTTGCCACCGCTGCCGGTGT------GCTGGTCGGA-------G 211
                      **  ***  *    *** *  **  **    *** *      **  *** *         

consensus_3226#0      CTGCCGGCATCTTAGTCTTAATGGTTTCCAGTCCACCGTCCACCTCGCGCACGACCTTTA 416
consensus_3226#1      GCGCCGGAGCGCTTCTGTACGCGCTCGAACAATCGGTGTCCGCTTCCGGTACGG------ 265
                        *****     *  * *    * *        *   **** * **  * ***       

consensus_3226#0      ATGTATCTCCTTCTTTTTCGACCTTAGAGGCGAAAGTAGCCTGTGGCCAATCTAACACAG 476
consensus_3226#1      AGGTG-CACCCACCGGAGCTGCCATGGAACCATAAGGG---TATGCTCGA-CTCGCTCGA 320
                      * **  * **  *     *  ** * **  *  ***     * **  * * **  * *  

consensus_3226#0      CGGCAGTCATCTGCGCCGTCTGATTGCAATCATCATCGATGGCTTGCTTACCGAGAATCA 536
consensus_3226#1      CCACG--CGTCGGTCCGGCGCGGGTACGAGGTGTACAAGCAGGT-GTGTGCGGCCTGCCA 377
                      *  *   * ** *  * *   *  * * *     *      * * *  * * *     **

consensus_3226#0      CTAGATCCGCTTTCTCATCTTGTGCGAGTTTGGCCAGTATTTT------CGAAACATGAA 590
consensus_3226#1      CTCGATGCGCTTCATCGCCTACCGCAA-TCTGGTCGGCGTGTCGCACACCGAGGCGGAAG 436
                      ** *** *****  **  **   ** * * *** * *  * *       ***  *   * 

consensus_3226#0      T--AGGCTGAAGAAGATCAAACTCCTTGCCTGCTACC-TCTACATGTATTCCACGATCTG 647
consensus_3226#1      CGAAGGCCGAGGCGGAGGAGA-TCCAGGTGCGCGACGGTCCGGACGAGGCGGGCAACTAC 495
                         **** ** *  **  * * ***  *   ** **  **   * *       * *    

consensus_3226#0      CCCCCATGGCAAGG---GCCGTACGGAGTACTTCCTGGGATTGAGAAGGACCAACCGAAA 704
consensus_3226#1      TTCATGCGGCCCGGCAAGCTGTCCG-ACTATTTCCCGAGCCCGTACCCGAACGAG-GAAG 553
                        *    ***  **   ** ** ** * ** **** * *   *     ** * *  *** 

consensus_3226#0      CAACCACCACC-TCAGTGGCGATTTTTTTCTCTTTCAATTTGACTGCTTCTTCTACAGCA 763
consensus_3226#1      CGGCCCGCGCCGCCAACAACGGTGCCTATCCGCCCGATCTGAGCTACATTGCGCTCGCAC 613
                      *  **  * **  **    ** *   * **      *  *   ** * *      *    

consensus_3226#0      ATTTCATCAAAAGGGTTCATGGAGTGCTTGACCCCTTCAGTGACAACACCGGATTTGTCC 823
consensus_3226#1      GTCACGGTGGCGAGGACTATC---TGTTCGCGCTGCTCACCGGC---------------- 654
                       *  *        **   **    ** * *  *   ***  * *                

consensus_3226#0      GGCTTAACGCGAATCTTCACGGCATTGTCAATAACACGCTTTACTCCAACTAATACTCGG 883
consensus_3226#1      ------------------------------------------------------------
                                                                                  

consensus_3226#0      GACATGGTGAAATTTCTTTCTGCTCACTAGAAACTTCAGCACAAATAAAAATCCAGTAGG 943
consensus_3226#1      ------------------------------------------------------------
                                                                                  

consensus_3226#0      CCAACAGTGCTCGAGGAATTCCGCGGG 970
consensus_3226#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)