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Anopheles gambiae
cluster # 3237 cluster # 3237       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3237#0 length = 647 sequences # 1  
consensus_3237#1 length = 360 sequences # 1  
consensus_3237#2 length = 122 sequences # 1  

consensusID : consensus_3237#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATGACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAGGTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGATTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGAGTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTGTACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCACATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT]

[+] EMBL BM651700             [CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATGACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAGGTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGATTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGAGTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTGTACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCACATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT]


>consensus_3237#0 CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATG ACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAG GTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGA TTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGA GTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTG TACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTA GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA CATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT



consensusID : consensus_3237#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC]

[+] EMBL BM584352             [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC]


>consensus_3237#1 CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATC TTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATC TTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGT ATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTT ACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTG CTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC



consensusID : consensus_3237#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 122
fasta sequence
                              [TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG]

[+] EMBL BM614695             [TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG]


>consensus_3237#2 TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGA TCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGG AG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3237#0      CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATG 60
consensus_3237#1      ------------------------------------------------------------
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      ACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAG 120
consensus_3237#1      ------------------------------------------------------------
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      GTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGA 180
consensus_3237#1      ------------------------------------------------------------
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      TTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGA 240
consensus_3237#1      ------------------------------------------------------------
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      GTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTG 300
consensus_3237#1      ------------------------------------------------------------
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      TACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTA 360
consensus_3237#1      -------------CCGCCCACGCG---TCCGCCCAC---GCGTCCGGAGAGGGTGAAGTA 41
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG 420
consensus_3237#1      GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG 101
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC 480
consensus_3237#1      GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC 161
consensus_3237#2      ------------------------------------------------------------
                                                                                  

consensus_3237#0      AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA 540
consensus_3237#1      AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA 221
consensus_3237#2      ----------------------------------------------------TGCCGAAA 8
                                                                            ** ***

consensus_3237#0      GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 600
consensus_3237#1      GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 281
consensus_3237#2      GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 68
                      ************************************************************

consensus_3237#0      CATGGA--GAGCTTGCATTTGCTATCAGCTGTA-TTATAATGGCCATAAT---------- 647
consensus_3237#1      GATGGA--GAGCTTGCATTTGCTATCAGCTGTA-TTATAATGGCCATAATAGGTGCTTAC 338
consensus_3237#2      GATGGAATGAATTTGCCTTCAC-ATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG----- 122
                       *****  **  **** **  * **  *****  ****  ****  ** *          

consensus_3237#0      ----------------------
consensus_3237#1      ATTGGTGCTTCGGCAGCGGCTC 360
consensus_3237#2      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)