These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATGACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAGGTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGATTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGAGTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTGTACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCACATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT] [+] EMBL BM651700 [CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATGACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAGGTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGATTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGAGTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTGTACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCACATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAAT] consensusID : consensus_3237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC] [+] EMBL BM584352 [CCGCCCACGCGTCCGCCCACGCGTCCGGAGAGGGTGAAGTAGTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTGGACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTACAACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAGAGCTTGCATTTGCTATCAGCTGTATTATAATGGCCATAATAGGTGCTTACATTGGTGCTTCGGCAGCGGCTC] consensusID : consensus_3237#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence [TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG] [+] EMBL BM614695 [TGCCGAAAGAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCAGATGGAATGAATTTGCCTTCACATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3237#0 CCGGGCATAAAGCACATGGCATATGACAAGCTTCTGCAGCGGGTTAGTGAAATTGAGATG 60 consensus_3237#1 ------------------------------------------------------------ consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 ACCGATGGACGGAAGATATTGTACCAGTATGATGTGCGCGCAGAGCGGACATTCAAGCAG 120 consensus_3237#1 ------------------------------------------------------------ consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 GTTCGAGCAAAGGATGAAACGGTCTTAAGTGAAAAGTACTACATTCGAGATGCGAATGGA 180 consensus_3237#1 ------------------------------------------------------------ consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 TTCGTACTAATGGACATAGACATGGCTTACCTGACGAATGATCATCCGCCGGACGTGCGA 240 consensus_3237#1 ------------------------------------------------------------ consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 GTGACGAGCTACATCTACAAGGATCAACAGCTGATTGGGTTTGTGCGCAACGATAAGCTG 300 consensus_3237#1 ------------------------------------------------------------ consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 TACGGGGTCATCACAGATCATGAAGGATCTGTACGCTTGGTGGTGAGAGAGGGTGAAGTA 360 consensus_3237#1 -------------CCGCCCACGCG---TCCGCCCAC---GCGTCCGGAGAGGGTGAAGTA 41 consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG 420 consensus_3237#1 GTCGCCGCTTATGATTATCTTCCATATGGGCAGATATTCCGACGCTTTGGGACCGATTTG 101 consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC 480 consensus_3237#1 GACGGACAGATCTCGTATCTTTACACGGGTCAGGAGTGGGAACCGGAGACCGGGCTGTAC 161 consensus_3237#2 ------------------------------------------------------------ consensus_3237#0 AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA 540 consensus_3237#1 AACTATCGAGCTCGTTTGTATGATCCCGACATTGGGAGGTTCTATCAAATGGATCCAAAA 221 consensus_3237#2 ----------------------------------------------------TGCCGAAA 8 ** *** consensus_3237#0 GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 600 consensus_3237#1 GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 281 consensus_3237#2 GAACAGTACCCAAGCCCTTACGTTTATGCCGGAAACTCGCCCGTTTCGTTGATCGATCCA 68 ************************************************************ consensus_3237#0 CATGGA--GAGCTTGCATTTGCTATCAGCTGTA-TTATAATGGCCATAAT---------- 647 consensus_3237#1 GATGGA--GAGCTTGCATTTGCTATCAGCTGTA-TTATAATGGCCATAATAGGTGCTTAC 338 consensus_3237#2 GATGGAATGAATTTGCCTTCAC-ATTGGCTGTGCTTATTTTGGCGTTAGTCGGAG----- 122 ***** ** **** ** * ** ***** **** **** ** * consensus_3237#0 ---------------------- consensus_3237#1 ATTGGTGCTTCGGCAGCGGCTC 360 consensus_3237#2 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||