These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 992 fasta sequence [TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCCCGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTCATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAG-GTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTG-AAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA] [+] EMBL CNS08WZM [TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCCCGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTCATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAG GTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTG AAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGGTTATGGGCAATA ] [-] EMBL CNS08WZN [ TCAAGCCGAACATAACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCCCCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAGCGTG ACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTTTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCCCAATACCGCCGGGGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA] consensusID : consensus_3238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTGCGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATGACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTGGAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT] [+] EMBL AL932594 [AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTGCGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATGACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTGGAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3238#0 TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCC 60 consensus_3238#1 --------------------------------AATNGCCACGAGGCTGATACATCGCGCT 28 ** ** ** * * * * consensus_3238#0 CGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTC 120 consensus_3238#1 CGT----GCTATCGCGC--TTGTTTCAGCGAGTTTGTGCGCG-----TAGGCGAGTTTCT 77 *** **** * ** *** ** * ** ** ** * ** * consensus_3238#0 ATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATC 180 consensus_3238#1 AACGCGTCGCAGAGAGATCCAAGCGGT----TGCACTG-GACACCATGACTATT----TC 128 * * * ** * * * * ** * **** * ** ** ** ** consensus_3238#0 AAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCA--ATGCGGTCTTCCTGT 238 consensus_3238#1 AGCAATCCCACC-CCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGT 187 * * * * ** *** * * * * * ** * * *** * **** consensus_3238#0 ACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGA 298 consensus_3238#1 TC--------TGGCGCCGG-GAGTCCTCCAAGGTGAAGTTCCGCTAC------GATGTGG 232 * *** *** ** ****** * * * * * ** * * * consensus_3238#0 AGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCG 358 consensus_3238#1 AGGTGCTCGA--GTTCACCAAAGACCCGTACGAGGATCAGCTGC-TCATCACG---GACA 286 ***** *** * * * ** * * * * * * *** *** * * consensus_3238#0 ACGGGACGAGAAACGGGAAGGAG-AAGAACACACGAACATTCTTATACAAAGTGCAAAGT 417 consensus_3238#1 GTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCG 346 * * *** * * *** ** ** * ** * * * * ** * consensus_3238#0 GCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGT 477 consensus_3238#1 TCGTTTGTGTGACGTGTGTCGCGGCCATTGCC---GTTA--CGGTAGTGCTGCCCTGGTT 401 * * * * * ** **** ** **** * * * * * ** * consensus_3238#0 AGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAG 537 consensus_3238#1 CCTGATCGGATCGGCTTGAGCATTGGTC---TTGAATATTCCCACCCCCCACACACACAC 458 * ** * * * * * * *** * * ** * * * * consensus_3238#0 TCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGC 597 consensus_3238#1 CCACT--ATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAA-GAGTGT 515 ** * *** * ** * * * ** ** * * * ** * * * * * consensus_3238#0 GCGGGAGGTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTT 657 consensus_3238#1 TGTGAAAAAGCATGTGAATCGCTTGGAAGGAA-GTTCCCTCCC---AACCCAAGCACACC 571 * * *** ** * ** * * * **** **** * consensus_3238#0 TTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAGCGCTGGGGGAGGAGAGTGA 717 consensus_3238#1 ACAAT------TGTGATA-GCTGTCCCTA-----GCAGAAAGAGTGAGAAAGTGGTGTGA 619 *** * ***** ** ** * * ** *** ** * ** * **** consensus_3238#0 GAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTC 777 consensus_3238#1 AACAAAACGGAGTCTACGAAA----GTGTTAGGGACATTT-------------------- 655 * * ** * * * * * ***** ** consensus_3238#0 CGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCG 837 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATT 897 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGG 957 consensus_3238#1 ------------------------------------------------------------ consensus_3238#0 GGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA 992 consensus_3238#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||