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Anopheles gambiae
cluster # 3238 cluster # 3238       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3238#0 length = 992 sequences # 2  
consensus_3238#1 length = 655 sequences # 1  

consensusID : consensus_3238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 992
fasta sequence
                              [TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCCCGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTCATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAG-GTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTG-AAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA]

[+] EMBL CNS08WZM             [TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCCCGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTCATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAG GTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTG AAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGGTTATGGGCAATA                    ]
[-] EMBL CNS08WZN             [                                                                                                                         TCAAGCCGAACATAACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATCAAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGACGGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCAATCATCACCATCCCCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCGGGAGCGTG ACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAAGCGCTGGGGGAGGAGAGTGAGAGGCATTGGCATTTTTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCCCAATACCGCCGGGGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA]


>consensus_3238#0 TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCC CGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTC ATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATC AAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCAATGCGGTCTTCCTGTAC AAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGAAG GTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCGAC GGGACGAGAAACGGGAAGGAGAAGAACACACGAACATTCTTATACAAAGTGCAAAGTGCA TGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGTAGT ACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAGTCA ATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGCGCG GGAGGTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTTTTA ATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAGCGCTGGGGGAGGAGAGTGAGAG GCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTCCGT TTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCGGTA TGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATTGTG TATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGGGGG TTATGGGCAATAAAATGGAAGAAAATGAAAAA



consensusID : consensus_3238#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence
                              [AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTGCGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATGACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTGGAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT]

[+] EMBL AL932594             [AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTGCGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATGACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTCGAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACGTGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGAGCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTGGAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAAGAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT]


>consensus_3238#1 AATNGCCACGAGGCTGATACATCGCGCTCGTGCTATCGCGCTTGTTTCAGCGAGTTTGTG CGCGTAGGCGAGTTTCTAACGCGTCGCAGAGAGATCCAAGCGGTTGCACTGGACACCATG ACTATTTCAGCAATCCCACCCCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGC CATCTGTTCTGGCGCCGGGAGTCCTCCAAGGTGAAGTTCCGCTACGATGTGGAGGTGCTC GAGTTCACCAAAGACCCGTACGAGGATCAGCTGCTCATCACGGACAGTGAGCTGAGCAGG GCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCGTCGTTTGTGTGACG TGTGTCGCGGCCATTGCCGTTACGGTAGTGCTGCCCTGGTTCCTGATCGGATCGGCTTGA GCATTGGTCTTGAATATTCCCACCCCCCACACACACACCCACTATGTCATTGTGCGCAGT GGGGGACAGTGTGTGTGTATGTGAGTGAAGAGTGTTGTGAAAAAGCATGTGAATCGCTTG GAAGGAAGTTCCCTCCCAACCCAAGCACACCACAATTGTGATAGCTGTCCCTAGCAGAAA GAGTGAGAAAGTGGTGTGAAACAAAACGGAGTCTACGAAAGTGTTAGGGACATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3238#0      TTTATTGCCCTTCTGTGCAGCAGCAGCCAACCAAAGTCCGTTGGGTCAAAGTGTTTCCCC 60
consensus_3238#1      --------------------------------AATNGCCACGAGGCTGATACATCGCGCT 28
                                                      **   **    **   *    *  * * 

consensus_3238#0      CGTCAAAACTATTGTGCCTTTGGTTTGACCGGTGCGTACGTAGACTTCAAGCAGATCGTC 120
consensus_3238#1      CGT----GCTATCGCGC--TTGTTTCAGCGAGTTTGTGCGCG-----TAGGCGAGTTTCT 77
                      ***     **** * **  *** **   *  **  ** **        * **   *    

consensus_3238#0      ATCAAGCCGAACATGACTGCCGCCGTTGACCTGCAGAGCGATGCCGTGTTCGCCGGCATC 180
consensus_3238#1      AACGCGTCGCAGAGAGATCCAAGCGGT----TGCACTG-GACACCATGACTATT----TC 128
                      * *  * ** * *    * *   ** *    ****  * **  ** **          **

consensus_3238#0      AAGGACCGCGTGGCCGAGAACGAGGCCAAGGCGAAGGCCATCA--ATGCGGTCTTCCTGT 238
consensus_3238#1      AGCAATCCCACC-CCCAGAGCCCGTCTGGTGTTTGGACCGGCGGGACTCGGGCCATCTGT 187
                      *   * * *    ** *** *  * *    *    * **  *   *  *** *   ****

consensus_3238#0      ACAAAATCACCAGCGGCGGTAAGGTGGCCAAGGAGTGGGTGCTCGACCTGAAGAACGCGA 298
consensus_3238#1      TC--------TGGCGCCGG-GAGTCCTCCAAGGTGAAGTTCCGCTAC------GATGTGG 232
                       *          *** ***  **    ****** *  * * * * **       * * * 

consensus_3238#0      AGGTGTACGAAGGCCCGGTACAGGGTGGCGGTAAGGCCGACACCACCATGACGATAGCCG 358
consensus_3238#1      AGGTGCTCGA--GTTCACCAAAGACCCGTACGAGGATCAGCTGC-TCATCACG---GACA 286
                      *****  ***  *  *   * **    *    * *  *  *  *  *** ***   * * 

consensus_3238#0      ACGGGACGAGAAACGGGAAGGAG-AAGAACACACGAACATTCTTATACAAAGTGCAAAGT 417
consensus_3238#1      GTGAGCTGAGCAGGGCGAAACAGCAACAGCAGCAGGCCGGTGCCGTCTCAAACATGATCG 346
                        * *  *** *  * ***  ** ** * **   *  *  *    *   **     *   

consensus_3238#0      GCATGCCAGCCAGAGTTCGTACGTACATTTCCAAAGTTAAGCAGAATTCCGTTTTCGGGT 477
consensus_3238#1      TCGTTTGTGTGACGTGTGTCGCGGCCATTGCC---GTTA--CGGTAGTGCTGCCCTGGTT 401
                       * *    *  *    *    **  **** **   ****  * * * * *      ** *

consensus_3238#0      AGTACTCATCACCACCACACTACAAGCCACACCGAACAACGCAACGCGGGGTCTATAAAG 537
consensus_3238#1      CCTGATCGGATCGGCTTGAGCATTGGTC---TTGAATATTCCCACCCCCCACACACACAC 458
                        *  **    *  *   *  *   * *     *** *   * ** *       * * * 

consensus_3238#0      TCAATCATCACCATCACCGGAAGAGAAGCTCTAGGTTCGTTTGTTTTAGCGGATGGGCGC 597
consensus_3238#1      CCACT--ATGTCATTGTGCGCAGTGGGGGACAGTGTGTGTGTATGTGAGTGAA-GAGTGT 515
                       ** *      ***     * ** *  *  *   **  ** * * * ** * * * * * 

consensus_3238#0      GCGGGAGGTGCACTGGACAAGTTTTTACTGTATGTTCGTTCCCTTTGTTTTTCTTCCTTT 657
consensus_3238#1      TGTGAAAAAGCATGTGAATCGCTTGGAAGGAA-GTTCCCTCCC---AACCCAAGCACACC 571
                         * *   ***   **   * **  *  * * ****  ****             *   

consensus_3238#0      TTAATCTGCCCTCTGATAAGCCGTTCGAACCGGTGCTGAAGCGCTGGGGGAGGAGAGTGA 717
consensus_3238#1      ACAAT------TGTGATA-GCTGTCCCTA-----GCAGAAAGAGTGAGAAAGTGGTGTGA 619
                        ***      * ***** ** ** *  *     ** ***    ** *  **  * ****

consensus_3238#0      GAGGCATTGGCATTTCTTTTACGCCGCGAAAGGGAAGATTGTTATTATGTTTCGTGTTTC 777
consensus_3238#1      AACAAAACGGAGTCTACGAAA----GTGTTAGGGACATTT-------------------- 655
                       *   *  **  * *     *    * *  *****   **                    

consensus_3238#0      CGTTTTATGTTGTTTCTAATTTTAAATCCGTTGCTCCCTTACGCCGTATGCTTAATTGCG 837
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GTATGGCGGTACCTTTACTCTGTTATTATAACGACCTACACTGGTAGAAGAGCTAGTATT 897
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GTGTATGTATGGTGTCGATTGCGTTGGCATGTTTAAATCAAAAATCCACAATACCGACGG 957
consensus_3238#1      ------------------------------------------------------------
                                                                                  

consensus_3238#0      GGGTTATGGGCAATAAAATGGAAGAAAATGAAAAA 992
consensus_3238#1      -----------------------------------
                                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)