These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1018 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTGGTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCAAACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCCACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGTGACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGGCATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCGTGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCCCAGTGGAAATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTCATCGATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGTACCTCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAGGCTACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGTGCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAGCTGGAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGATACGTCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAGCAGAACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATGCGGCTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGAGAGGGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGCA] [+] EMBL BM577526 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTGGTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCAAACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCCACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGTGACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGGCATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCGTGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCCCAGTGGAAATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTCATCGATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGTACCTCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAGGCTACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGTGCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCG ] [+] EMBL BX608242 [ GTCATCGACGTGAAGCCAACGGACGAAGGTAGCGCCGAGGCTACGACCCCCAAAGCACCGACCGATGTCGAGGTGGGCAATCGTAACGGTGACGAAGGTGCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAGCTGGAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGATACGTCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAGCAGAACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATGCGGCTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGAGAGGGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGCA] consensusID : consensus_3249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence [CGTTTATTTAAATAGCTTCTGATTGATATGATTTACTGCTAACAACGCTTGCTGCTTGCTCTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACAAAAGGCTTATACGACCAGCACGCAGCA] [+] EMBL CNS090D6 [CGTTTATTTAAATAGCTTCTGATTGATATGATTTACTGCTAACAACGCTTGCTGCTTGCTCTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACAAAAGGCTTATACGACCAGCACGCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3249#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTTCGCGACCAGCCTGCTGCTG 60 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 GTGGTTGCCTTGACCGTGACCGCCACCGTCGCCTATCCAGCGAGCTACGAGAAGGAGTCA 120 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 AACTCGGATGCCTCGGATGATGCAGAGTATATTGTGGTGCCGCTGTCACACCATCGCCCC 180 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 ACGTACTACAACCGTTATCCGTCGTCGTTCGAAGGCTTTGATGGTGTGGTAGATACCGGT 240 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 GACTTTGCACCAGTGCCGGCCAGACCCGTGTACTTCCCATCGTACAATCCGTTCTCGTGG 300 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 CATCTATCCGGATATCTGGATGATCTTCTGAAGCGTGTCCGCGATCGTTTCTCTGGTTCG 360 consensus_3249#1 --------CGTTTATTTAAATAG-CTTCTGATTGATATGATTTACTGCTAACAACGCTTG 51 ** *** * ** ******* * * * * * * * * consensus_3249#0 TGGAATCCATTCTACGGTGGTGACTACCTGCCATCCGGACCAGGCTTCTTCC---CAGTG 417 consensus_3249#1 CTG--CTTGCTCTACGAGGTCAACGAGATACGATTTGGAAATGGTTTACAGCAAACAACA 109 * ****** * ** * * * ** *** ** ** * ** consensus_3249#0 GAAATTCCGGATGACTCGTCGGAAGATGGGGTCACTAACACTACCTCCACTGTGAAGGTC 477 consensus_3249#1 AAAGGCTTATACGACCAGCACGCAGCA--------------------------------- 136 ** * *** * * ** consensus_3249#0 ATCGATGGGCACAAGGTCGTCATTAATGATACGTACTACACAAAGAAGACGGAGTTCGGT 537 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 ACCTCAATCTTTAAGGTGCGTGTCATCGACGTGAAGCCAACGGACGATGGTAGCGCCGAG 597 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 GCTACGACCCCCAAAGCACCGACCGATGTTGAGGTGGGCAATCGTAACGGTGACGATGGT 657 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 GCGGAGTCGGACAAGGAACCGGCTGCACCTGCGACCGATGCGCCCAAGCGCGATACCGAG 717 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 CTGGAATCGAGCGATGAAGACAAGACGACGGTGGACGAAGACAATCTGAACACGATCGAT 777 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 ACGTCCAACGTGGACATAGACGAGGCGAAGGAAAGGGTGGCACCGGAGGAGGCGGAGGAG 837 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 CAGAACTAGAAGCGGTGGCCAGAAGTGACATACCACACGTCGGTGGGGCGGCTCCAGATG 897 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 CGGCTGTACATCACGCAACGCAATGCATCAGACAACGGCACGGAGAATAGAACACGGAGA 957 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 GAGGGAAGGGAATGGGAGCTCGATGATGCCCGGGAGAGTGGAGTTTTAGGGTGGGATGGC 1017 consensus_3249#1 ------------------------------------------------------------ consensus_3249#0 A 1018 consensus_3249#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||