These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence [GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATGAAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTAATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATATTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTTCAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACAAATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCGAAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTATGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTCGATTTTCCATCC------AAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACAATTTTGTGTTTTTTTAAACTGGTG-TTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGTTGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAAATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTCAAAAAATAATAAAAGATGAAATCAACCAGTTTCTT] [+] EMBL BX608371 [GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATGAAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTAATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATATTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTTCAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACAAATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCGAAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTATGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTCGATTTTCCATCC AAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACAATTTTGTGTTTTTTTAAACTGGTG TTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGTTGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAAATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTCAAAAAATAATAAAAGATGAAATCAACCAGTTTCTT] [+] EMBL BM627208 [ ccGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATGAAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAACCTTTTCTCCTTAATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATATTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTTCAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACAAATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCGAAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTATGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTCGTTTTTCCATCCAAAAAAAAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACAATTTTGTGTTTTTTTAAACTGGTGTTTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGTTGAACTAT ] consensusID : consensus_3251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence [GCAATTGACAGCGATTTGCGAGGGCGCGCGAGGGCTTGCACGCCATACAAGTTCACAGCACCAGAGCCATCGCATTAAAGAGCTTGAAAGCCT] [+] EMBL BX618193 [GCAATTGACAGCGATTTGCGAGGGCGCGCGAGGGCTTGCACGCCATACAAGTTCACAGCACCAGAGCCATCGCATTAAAGAGCTTGAAAGCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3251#0 GGCGAGGTTCTGACCGCTGCCTAAACCAGTAACCGTTTGTTTGTAAACACTTTTTTCATG 60 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 AAACTAACAAAAGCGAGCTGAAAATATCATCCTAGGCTTGGCATCAAGCTTTTCTCCTTA 120 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 ATAGATCCCATCAAACATTGCGAGGGTTGCGAGTAGTATCTTATGATATTTTAAATAATA 180 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 TTAATTTTTTATTCATAAATTATTTTTTTGTGGTTTTATTTGGCGAAAAGATCACTATTT 240 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 CAATTTTTGTGGATTTTTTCAAAAAAAAATGGTAAAAATCCAGGTGTTTAGTATGCTACA 300 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 AATCGCACTGTTATACCTGCTCTCGGGGTGCTATAGTTATAACTGCTAAAACTAGGGGCG 360 consensus_3251#1 --------------------------------------GCAATTG--ACAGCGATTTGCG 20 ** ** * * * * *** consensus_3251#0 AAAAAACTGCCTAGGCTCGCAAGCTCTTTAATGCGAGGGCTCTGGTGCTGTGAACTTGTA 420 consensus_3251#1 AGGGCGC-GCGAGGGCTTGCACGCCATACAAGTTCACAGCACCAGAGCCATCGCATTAAA 79 * * ** **** *** ** * ** * ** * * ** * ** * consensus_3251#0 TGGCGTGTGAGCCCTCGCGCGCCCTCGAAAATTGCTGTCAATTGCACGGCGGGATCTTTC 480 consensus_3251#1 GAGCTTGAAAGCCT---------------------------------------------- 93 ** ** **** consensus_3251#0 GATTTTCCATCCAAAAAAAAAATCAAAAATTTTGCACTTACAACAATTTTTTTTTCTACA 540 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 ATTTTGTGTTTTTTTAAACTGGTGTTTTTTCCATAAAAATGCATGCCAACTAAAAAGCGT 600 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 TGAACTATTGAATTCTGTCTGTACATATTTCAGGAGATTTGAAGATTAGCACAGGATTAA 660 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 ATTCAATCATGGAATTCGAATCAATTAAATAATAACTCATTTTTATTATTAATGCACTTC 720 consensus_3251#1 ------------------------------------------------------------ consensus_3251#0 AAAAAATAATAAAAGATGAAATCAACCAGTTTCTT 755 consensus_3251#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||