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Anopheles gambiae
cluster # 3257 cluster # 3257       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3257#0 length = 976 sequences # 2  
consensus_3257#1 length = 625 sequences # 1  

consensusID : consensus_3257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 976
fasta sequence
                              [CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCCAAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGACCAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACCAACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGCGGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGTCGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCACCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTCCACCTCCTCCTCGCTA]

[+] EMBL BM633938             [CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCCAAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGACCAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCA                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM586184             [                                                                                                                                                                                                                                                                                                                                                                                                                            CCGCACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACCAACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGCGGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGTCGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCACCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTCCACCTCCTCCTCGCTA]


>consensus_3257#0 CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCC AAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTT CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT CGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGAC CAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACC AACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGC GGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGT CGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCA CCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTC CACCTCCTCCTCGCTA



consensusID : consensus_3257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence
                              [CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGCGGG]

[+] EMBL BM590507             [CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGCGGG]


>consensus_3257#1 CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACC GAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACG GGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTC GTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAAC ATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTA GCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCA GCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGC AGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACA GTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTG GCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCA CTCACTATCCTTCCACTTCTGCGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3257#0      CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCC 60
consensus_3257#1      ------------------------------------------------------------
                                                                                  

consensus_3257#0      AAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTT 120
consensus_3257#1      --------------------------------------------CCGCGGAAACGTTGTT 16
                                                                   * *************

consensus_3257#0      CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT 180
consensus_3257#1      CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT 76
                      ************************************************************

consensus_3257#0      CGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGAC 240
consensus_3257#1      CGGTACACTGCGATCGCACCAGG------------------------------------- 99
                      ***********************                                     

consensus_3257#0      CAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG 300
consensus_3257#1      -----------------TATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG 142
                                       *******************************************

consensus_3257#0      ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT 360
consensus_3257#1      ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT 202
                      ************************************************************

consensus_3257#0      GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA 420
consensus_3257#1      GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA 262
                      ************************************************************

consensus_3257#0      TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC 480
consensus_3257#1      TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC 322
                      ************************************************************

consensus_3257#0      CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT 540
consensus_3257#1      CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT 382
                      ************************************************************

consensus_3257#0      AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC 600
consensus_3257#1      AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC 442
                      ************************************************************

consensus_3257#0      GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA 660
consensus_3257#1      GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA 502
                      ************************************************************

consensus_3257#0      CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACC 720
consensus_3257#1      CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCC 562
                      ********************************************************* **

consensus_3257#0      AACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGC 780
consensus_3257#1      AACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGC 622
                      ************ ******** *************** **********************

consensus_3257#0      GGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGT 840
consensus_3257#1      GGG--------------------------------------------------------- 625
                      ***                                                         

consensus_3257#0      CGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCA 900
consensus_3257#1      ------------------------------------------------------------
                                                                                  

consensus_3257#0      CCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTC 960
consensus_3257#1      ------------------------------------------------------------
                                                                                  

consensus_3257#0      CACCTCCTCCTCGCTA 976
consensus_3257#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)