These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 976 fasta sequence [CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCCAAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGACCAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACCAACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGCGGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGTCGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCACCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTCCACCTCCTCCTCGCTA] [+] EMBL BM633938 [CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCCAAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGACCAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCA ] [+] EMBL BM586184 [ CCGCACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACCAACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGCGGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGTCGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCACCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTCCACCTCCTCCTCGCTA] consensusID : consensus_3257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGCGGG] [+] EMBL BM590507 [CCGCGGAAACGTTGTTCCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTTCGGTACACTGCGATCGCACCAGGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGGACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTATGAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCATTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATCCAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATTAAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGACGACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGACGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCCAACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3257#0 CCGCGCCGAGCCTGTACTATTACCTCAGCCGTCTAGTCAGAATAAGATGCAACATTCGCC 60 consensus_3257#1 ------------------------------------------------------------ consensus_3257#0 AAAAAATACGCTAAGAAAACCGATGGGCCATCACCATGGCGTCAACTCGGAAACGTTGTT 120 consensus_3257#1 --------------------------------------------CCGCGGAAACGTTGTT 16 * ************* consensus_3257#0 CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT 180 consensus_3257#1 CCAGTTCCAGCCGGACAACTACAACAATGCACGCGACAATTACCGAGGCCGTGACAACTT 76 ************************************************************ consensus_3257#0 CGGTACACTGCGATCGCACCAGGGTGATAATTATCGTCGCGGTGACGGATTTTCAACGAC 240 consensus_3257#1 CGGTACACTGCGATCGCACCAGG------------------------------------- 99 *********************** consensus_3257#0 CAGAAGTGTCAAAAAAGTATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG 300 consensus_3257#1 -----------------TATATCTTTGAGACGGAAACGGGGCGGCTGAGACCAGCCAGGG 142 ******************************************* consensus_3257#0 ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT 360 consensus_3257#1 ACTGATCAATCAAAATATGGTCCTTAACTCAAACACTCGTAATAGAAGTCTCGGCCGTAT 202 ************************************************************ consensus_3257#0 GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA 420 consensus_3257#1 GAAAAGGCAGCCGCCCCGGCATGGTATGGTAACACAACATCGTTCCGACAGTCCACACCA 262 ************************************************************ consensus_3257#0 TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC 480 consensus_3257#1 TTCCAGCTCCGGATCTTCCCCCGTCATGTCCAACAGTAGCTCTAGCCCTGCGCCCCCATC 322 ************************************************************ consensus_3257#0 CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT 540 consensus_3257#1 CAGCAGTCCCAGCCCGCAGGAGAGCCCCAAGAACTGCAGCTACATCTACCGGGATTGATT 382 ************************************************************ consensus_3257#0 AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC 600 consensus_3257#1 AAGACACGTGCCCCAGCAGCAGCAGCAGCAACAGCAGCAGCAACGACATCCTGCAGCGAC 442 ************************************************************ consensus_3257#0 GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA 660 consensus_3257#1 GACGAGCCTGTCCTATCCGGCACTCGTCGTGCTCAACAGTGACGCCGCGGCTGGTGGCGA 502 ************************************************************ consensus_3257#0 CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGACC 720 consensus_3257#1 CGGTGGTATACTTTACCCTTCTGACAGCAACAACGGTGGCGGTGCCGTGCCGGCCGGCCC 562 ********************************************************* ** consensus_3257#0 AACCACCCCACACCCCAACTATACACTCTGCTACCCCCCTCACTATCCTTCCACTTCTGC 780 consensus_3257#1 AACCACCCCACAGCCCAACTACACACTCTGCTACCCCACTCACTATCCTTCCACTTCTGC 622 ************ ******** *************** ********************** consensus_3257#0 GGGCGCTGGCAGCTCGTACACTCCCGGCCCGTCCGCCGCCGCTGCCGCCTATCAACCGGT 840 consensus_3257#1 GGG--------------------------------------------------------- 625 *** consensus_3257#0 CGCCTCGATGCCACGGTCCGCCTCGCCGCTCGCCAGCAGTTCGCGCATCCACACGCACCA 900 consensus_3257#1 ------------------------------------------------------------ consensus_3257#0 CCTGCTGAACAGCACCAACAGCAGCGGCAACGATACGACCAAAAAGCTGAACCGGCTCTC 960 consensus_3257#1 ------------------------------------------------------------ consensus_3257#0 CACCTCCTCCTCGCTA 976 consensus_3257#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||