These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3267#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 810 fasta sequence [AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAAACTGGTTGGAGCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGTGTGGCTCGTGTTCGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCAGAAAATTGGGAGTGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAGCGTTCGTTTGCTAAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGAGAGCCGCGACCGAACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGAAGAAGACGCTTGAGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAACACCCCCAGAGTACGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAACGGAACAGAAGCGGAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTATTATTATTATGATTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAATCAAAACGCTACTGCATGTAACGACACTAACGAATTAACTTCT] [+] EMBL BX615393 [AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAA ] [+] EMBL BX617244 [ GAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGAAGGGGGAGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATACAAACTGGTTGGAGCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGTGTGGCTCGTGTTCGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCAGAAAATTGGGAGTGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAGCGTTCGTTTGCTAAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGAGAGCCGCGACCGAACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGAAGAAGACGCTTGAGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAACACCCCCAGAGTACGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAACGGAACAGAAGCGGAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTATTATTATTATGATTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAATCAAAACGCTACTGCATGTAACGACACTAACGAATTAACTTCT] consensusID : consensus_3267#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCTGAATTTAAACACAAAAAACACACACACGAATGATATTCCAATGCGTTATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAACCGCCTAACACCACAATCATCATGCGAAGGGGGGAGCACAACACATTATCATACGTACGCTGTAAAAGATATTGTCATTGTAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT] [+] EMBL BM626637 [CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCTGAATTTAAACACAAAAAACACACACACGAATGATATTCCAATGCGTTATTAGATATTATATTACTTTGTTACGCGAACGCTCTAACACAACCGCCTAACACCACAATCATCATGCGAAGGGGGGAGCACAACACATTATCATACGTACGCTGTAAAAGATATTGTCATTGTAGTTCAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3267#0 ------------------------------------------------------------ consensus_3267#1 CCGGCAAAAGCAAATGCAAAAACAGAACAAAACCCCTGTGCGTTATTAATCTCAAAGGCT 60 consensus_3267#0 -----------AAACACACACACACACGAATGATATTCCAAGATGCGTCATTAGATATTA 49 consensus_3267#1 GAATTTAAACACAAAAAACACACACACGAATGATATTCCA--ATGCGTTATTAGATATTA 118 ** * *********************** ****** *********** consensus_3267#0 TATTACTTTGTTACGCGAACGCTCTAACACAAACACTCTAACACCACAATCATCATGCGA 109 consensus_3267#1 TATTACTTTGTTACGCGAACGCTCTAACACAACCGC-CTAACACCACAATCATCATGCGA 177 ******************************** * * *********************** consensus_3267#0 AGGGGG-AGCACAACACATCATTATCATCGTACGCTGTAAGAGATATTGTCAATGAAGTT 168 consensus_3267#1 AGGGGGGAGCACAACACATTATCAT--ACGTACGCTGTAAAAGATATTGTCATTGTAGTT 235 ****** ************ ** ** ************ *********** ** **** consensus_3267#0 CAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGTGGAGCGATAC 228 consensus_3267#1 CAAACATTAATCAAAATCATCACATAACGGTTTTCACAACTACAAGAAGT---------- 285 ************************************************** consensus_3267#0 AAACTGGTTGGAGCAATGGAGCAATGGAAGCACGCGTGCTACAAACTCGTCTGACGATGT 288 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 GTGGCTCGTGTTCGCGTATGAAGGATACCTCCCGAAAGAGGAGGGAAGAATAGAGGGTCA 348 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 GAAAATTGGGAGTGCGTGCGCGTGTTGTTTGCGGTAAACATTCATGCAGAGCAGAGTTAG 408 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 CGTTCGTTTGCTAAACAACGTGAGAAAAACTTGTACTAATCATTAGCCTGTAGGGAAGGA 468 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 GAGCCGCGACCGAACCGGACCGAAATCGAAAGTGATGCATCTGCGAGGCGCGAAGAGAGA 528 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 AGAAGACGCTTGAGATTGAATGAGCAGAGAATGGCTTAACTGGCACGACAGTACAGTAAC 588 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 ACCCCCAGAGTACGCTTGTATGTGTTGCGCCTCACACAAGAACAAGGGCCAGTGAAAAAC 648 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 GGAACAGAAGCGGAAAGCGGCAAGAATCAAAATGTGTATTTTTGGCTTTAAAAAACGGTA 708 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 TTATTATTATGATTATTGAAAGTGTAAAGAAAAGCACATACACATACACAGACATTAAAT 768 consensus_3267#1 ------------------------------------------------------------ consensus_3267#0 CAAAACGCTACTGCATGTAACGACACTAACGAATTAACTTCT 810 consensus_3267#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||