These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3271#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 736 fasta sequence [GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGTAAACAA-GATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTAAAACAACAACACTCCAACCCGTAAATGTCACCAACTTAACAAGCGTTGAACCGGTTTACTTCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTGAGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCATCCTTCATCTTCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAGTAATAGTCTGCGAAGGCTGGTATAGAGTGCCCATGTCGAAGTACATTCGCTGGTTTACTACGGCACGCTTCTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCCAGAAAAGTACAGATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGAATGCAGTTTTGTGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAATGTTTCCAGTAGGCCAAAAGTCCTCGAG] [+] EMBL BM649179 [GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGTAAACAA GATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTAAAACAACAACACTCCAACCCGTAAATGTCACCAACTTAACAAGCGTTGAACCGGTTTACTTCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTGAGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCATCCTTCATCTTCTG ] [+] EMBL CNS08ZU9 [ TTTTTGGTGTTAAACAATGATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACATGTTAAAACAACAACACTCCAACCCGTAGATGTCACCAACTTAACAAGCGTTGAACCGGTTTACTTCTCAAAGTACTTCTTGAACTCCTCAATGCCAGCCTGGTTAATCGCGGCGCCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAGTCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAGATGGACAGGTCGGCAATCGTGAGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGGTGTTCAGAAAGTCAACTGCATCCTTCATCTTCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAGTAATAGTCTGCGAAGGCTGGTATAGAGTGCCCATGTCGAAGTACATTCGCTGGTTTACTACGGCACGCTTCTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCCAGAAAAGTACAGATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGAATGCAGTTTTGTGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAATGTTTCCAGTAGGCCAAAAGTCCTCGAG] consensusID : consensus_3271#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGTTTGTCCTGGTTCGCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAAAAGGGTGCAACACTAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGCTGGACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTGCGAGCCCAAACACAATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCATTGGTGCGGACGACGAGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCAGCGAGGCGGCAGCGCTAACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTAGCGGCCAATCTCGGACGGGTCGCGATCGTGCGGCTGCTGCTGAAGGCGGGCGGAAATGTGGAGCTGCTGGACGAGGAAGACCGTACGCCGATCCAGCACGCCATCGATGGCGATCACTTCGAGGTGGTGCAGGTCATACAGAACCACGTCTTCGAGCAAAAGATCGACCAGAAGCGCAAGCAGCTAATCAAGCAGCAGCAGCAGGAACAACAACAAACCGTTCTGTCCCCCAGCATGCGGTTCAAGAAGAGTGTGG] [+] EMBL BM600110 [CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGTTTGTCCTGGTTCGCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAAAAGGGTGCAACACTAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGCTGGACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTGCGAGCCCAAACACAATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCATTGGTGCGGACGACGAGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCAGCGAGGCGGCAGCGCTAACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTAGCGGCCAATCTCGGACGGGTCGCGATCGTGCGGCTGCTGCTGAAGGCGGGCGGAAATGTGGAGCTGCTGGACGAGGAAGACCGTACGCCGATCCAGCACGCCATCGATGGCGATCACTTCGAGGTGGTGCAGGTCATACAGAACCACGTCTTCGAGCAAAAGATCGACCAGAAGCGCAAGCAGCTAATCAAGCAGCAGCAGCAGGAACAACAACAAACCGTTCTGTCCCCCAGCATGCGGTTCAAGAAGAGTGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3271#0 ----GACCCACGCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 56 consensus_3271#1 CGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTGTTTGTGCCCGGTTCGT 60 ************* ****** * * * *** * ** * consensus_3271#0 TGGGGGTAAACAAGATGAAAAATCAAACAGACAGACTTTTCATTTTTATTGTAAATACAT 116 consensus_3271#1 TTGTCCTGGTTC-GCTTTTTCATCGTTTTGTGCAAGTTAATACTGCAA--AAGGGTGCAA 117 * * * * * *** * * ** * * * * ** consensus_3271#0 GTTAAAACAACAACACTCCAACCCGTAAATGTCACCAACT-TAACAAGCGTTGAACCGGT 175 consensus_3271#1 CACTAAACAAAAACGCCCCCATGGCGAAGGCACGCGAAATGTATCTGGCGCTGTGCCTGC 177 ****** *** * ** * ** * * ** * ** * *** ** ** * consensus_3271#0 T---TACTTCTCAAAGTACTT-CTTGAACTCCTCAATGCCAGC-CTGGTTAATCGCGGCG 230 consensus_3271#1 TGGACGCAATCGAGGATGCGAACATAGAAGCCCTGCAGCTGGTGCTGGACAAGTACGGTG 237 * * * * * * * * ** ** * **** ** *** * consensus_3271#0 CCGGGCGCTTCCTTGCGAATGTTTTCGTACCACGCAGCGACGTGTTGGTACTTGGCCAAG 290 consensus_3271#1 C---GAGCCCAAACAC-AATCTTCCCGGAAAAGGGCGTCGCACCGATGCATCTGGTCA-- 291 * * ** * *** ** ** * * * * * * * *** ** consensus_3271#0 TCGAACCCGGCTACATCGTACGTCGAGATTGTGGCCAAAATGGACAGGGCGGCAATCGTG 350 consensus_3271#1 TTGGTGCGGACGACG--AGACGTTTGCGCTGCGGGCCACCTCGCTGATGCTGCA---GCG 346 * * * * * ** **** ** ** * * * * ** *** * * consensus_3271#0 AGACTATCACCTGCCACGTACTTGTGCCCGTCCAGGAAGCTGTTCAAAAAGCCGACCGCA 410 consensus_3271#1 AGGCGGCAGC--GCTA---ACCTGCCAGCGGCCGAACAGATGCTCACGCCGCTCCACGTA 401 ** * * ** * ** ** ** ** ** ** *** ** ** * consensus_3271#0 TCCTTCATCTTCTGTTCATTTTCTGGATTGGCCGGCTGCTTGGCGAAGATTTGAGGATAG 470 consensus_3271#1 GCGGCCAATCTCGGACGGGTCGC--GATCGTGCGGCTGCT-GCTGAAGGCGGGCGGA-AA 457 * ** ** * * * *** * ******** * **** * *** * consensus_3271#0 TAATAGTCTGCGAAGGCTGGTATAGAGTGCCCATGTCGAA-GTACATTCGCTGGTTTACT 529 consensus_3271#1 TGTGGAGCTGCTGGACGAGGAAGACCGTACGCCGATCCAGCACGCCATCGATGGCG-ATC 516 * **** ** * * ** * * ** * * *** *** * consensus_3271#0 ACGGCACGCTTCTGCGGGTCCTTGGGGTACAGCTTGTCGTCCTTGCCGTACTTCTCCGCC 589 consensus_3271#1 ACTTCGAGGTGGTGCAGGTC------ATACAGAACCACGTCTTCGAGCAAAAGATCGACC 570 ** * * * *** **** ***** **** * * * ** ** consensus_3271#0 AGAAAAGTACAGATAGCGCGGGACTCCCACAGGGCGAATCCATTGTCGACCAGCGTTGGA 649 consensus_3271#1 AGAAGCGCAAGCAGCTAATCAAGCAGCAGCAGCAGGAA--CAACAACAAACCGTTCTGTC 628 **** * * * * * *** *** ** * * * * ** consensus_3271#0 ATGCAGTTTTGTGGGTTAATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTTTCAAT 709 consensus_3271#1 CCCCAGCAT-GCGGTTCAAGAAGAGTGTGG------------------------------ 657 *** * * ** * ** * * consensus_3271#0 GTTTCCAGTAGGCCAAAAGTCCTCGAG 736 consensus_3271#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||