These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [CCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACAAAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGGGGTTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCGCAAAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTTGCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGCCATGGG] [+] EMBL BM626421 [CCGCGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACACACAAAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGGGGTTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCGCAAAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTTGCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGT ] [+] EMBL BX617215 [ TAACGGTTTTGCGAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGTAGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGCCATGGG] consensusID : consensus_3273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGCAATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAAACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCACACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACACACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGC] [+] EMBL BX616587 [GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGCAATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAAACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCACACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACACACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACAAAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACAACGGTTGGTCGCTATAGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3273#0 ------------------------------------------------------------ consensus_3273#1 GATCTGCAAAGGCATCGGTAAGAGCATGAACACTCCGCATCTAATCAAGAACACAATGGC 60 consensus_3273#0 ------------------------------------------------------CCGCGC 6 consensus_3273#1 AATAGACTCTCAAAAGACAAAAACGTGCTTCAAGCCTATGCTACTTTCCAATGGCAACAA 120 * * consensus_3273#0 ACA-CACACACACACACACACACACACACAC-ACACACACACACACACACACACACACAA 64 consensus_3273#1 ACAATGAATGGAAAGCCACAACTATAATGGTGACAAAGATGCAGGATGAAACAAATACCA 180 *** * * * **** * * *** * * ** * *** * ** * consensus_3273#0 -ACACACACACACACACACACACACACACACACAAACACACACACACACACACACACACA 123 consensus_3273#1 CACACACACACAGACACACACACACACACACATAGACACACACACACACACACACACACA 240 *********** ******************* * ************************* consensus_3273#0 CACA-AAACACCCACAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTTAACA 182 consensus_3273#1 CACACAAACACCCTCAAACACAACAAAAGGAAATTGCAGTTCAAAATCAATAGTTAAACA 300 **** ******** ***************************************** **** consensus_3273#0 AAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAG 242 consensus_3273#1 AAAATTATTTCTTGTAGAAAAGGAATGCTTTTTCTGCTGATAAAGAGAGAGAGGAGAGAG 360 ************************************************* ********** consensus_3273#0 AGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAGAGAGGGG 302 consensus_3273#1 AGAGAGAGAGAGAGAGA------------------------------------------- 377 ***** ***** ***** consensus_3273#0 TTGAGAGAGAGAGAGAGGAAAAGAAGTAAAAAAAGCCTAGCGACAACGGTTGGTCGCTAT 362 consensus_3273#1 --GAGAGAGAGAGAGAGGAGAAGAAGTAAAAAAAGCTTAGCGACAACGGTTGGTCGCTAT 435 ***************** **************** *********************** consensus_3273#0 AGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGCGCA 422 consensus_3273#1 AGTTTCCGTTCGTTCTGGCCACGTGTTTTATGGCCATTCTGCGCATTAGCTCTGGGC--- 492 ********************************************************* consensus_3273#0 AAATCTATTGCAGTTTTATTCATATATATAGACCATGTAACGAGCATGTAACGGTTTTGC 482 consensus_3273#1 ------------------------------------------------------------ consensus_3273#0 GAAATCAAACAACAAAATACTAACAAACAAAACTGTTGCTAAAATTAGCTAACACTTCGT 542 consensus_3273#1 ------------------------------------------------------------ consensus_3273#0 AGAAAAAACAAAAGGTAATCACAGTTTCTCACACAGTCAGTTCAGTCAGTCAGCCAGCCA 602 consensus_3273#1 ------------------------------------------------------------ consensus_3273#0 TGGG 606 consensus_3273#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||