These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1207 fasta sequence [CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCGAGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCATGCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATGGCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATGATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAATCTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATAAACCGGCCGACCGGTGGAAGTAAAGTGAAGGATAGTATCTAGTTTTACACGTCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAGTTTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGCTGTCGCTGAAGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAAAACAAAGCAAAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTTAGTGGGAAAAGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAGAAAAGGGGAATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAAGTGCGGGACGCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTACAGTGAGTGTGCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGCAAAGTAGGGCGCTAGA] [+] EMBL BM630601 [CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCGAGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCATGCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATGGCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATGATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAATCTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATAAACCGGCCGACCGGTGGAAGTAAAGTGAAGGATAGTATCTAGTTTTACACGTCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAGTTTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTT ] [+] EMBL BM581495 [ ccGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAACAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAG TTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGCTGTCGCTGAAGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAAAACAAAGCAAAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTTAGTGGGAAAAGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAGAAAAGGGGAATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAAGTGCGGGACGCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTACAGTGAGTGTGCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGCAAAGTAGGGCGCTAGA] consensusID : consensus_3295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence [CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAGTTGCTTGCCTATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTG] [+] EMBL BM580966 [CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGCTGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGTTGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAACACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAGTTGCTTGCCTATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCGTTTACGCCTTTCTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGATAGAAAACTAAAAAAGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3295#0 CCGCCCACGCGTCCGTGCTTTTTTCCTATACATTGACGTAGAACTAGAAGCTCGCGACCG 60 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AGTAGCAGTGACCGATAGAGGCACTAGAGGCACTAGAGACATACGCATTAATAGAGTCAT 120 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 GCCGCGAACGCTCTTCTACCGCTCTAGATAGTGAATGGGATACTACTACTCACCATCATG 180 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 GCCAATCTGGCGATACTTGTGGGGAAGGGGGGATGTTGGGGTCATACAGTAAGCTGTATG 240 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 ATGCTACCTCCCTTCCTCCTCATTATCGTGCGATGGTAGAGGGTGCAAAATTAAGGTAAT 300 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 CTTATCAAATTACATACATTTTACAACTACTCATACCATTATCAAAAAAGATGTGCGATA 360 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AACCGGCCGACCGGTGGAAGTAAA-GTGAAGGATA-GTATCTAGTT-TTACACGTCACGC 417 consensus_3295#1 ----------CCGAATGAATCGAGCGTTTCTCACACATGTCCATTTCTTACACATCACGC 50 *** *** * ** * * * ** * ** ****** ****** consensus_3295#0 TGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGT 477 consensus_3295#1 TGGCGAAGTAGTAGAGTGAGCGTACGGCGGCCGAGTCAGTAGGCAAAATGAATCGAGCGT 110 ************************************************************ consensus_3295#0 TTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGT 537 consensus_3295#1 TTCTCACACATGTCCATTTCTTACACATGTCGTTTTGCATAAATGCATCTGTATGTTAGT 170 ************************************************************ consensus_3295#0 TGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCCAAAAACAAAACAAAAACA---- 593 consensus_3295#1 TGCTGCACCTTGGTGTGATCACACAAAAGTACCAGCCAAAAAGCAAAACAAAAACAAAAA 230 ************************************* **** ************* consensus_3295#0 --CACACACACACAACAATACAGGACAGGCAAAGGACTCATACGAAACTGTTGAACCGAG 651 consensus_3295#1 CACACACACACACAACAATACAGGACAGGCAAAGGACTCATACGATACCGTTGAACCGAG 290 ******************************************* ** *********** consensus_3295#0 TTTGCTTGCCGATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCG 711 consensus_3295#1 TT-GCTTGCCTATCGCACAGCTCGCACGGAAACTGAAGTTGTTTGTTTGAACCGCAAGCG 349 ** ******* ************************************************* consensus_3295#0 TTTACGCCTTTCGATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGAT 771 consensus_3295#1 TTTACGCCTTTCTATAGGCATTTTCGAACTGTTTGAACCCGATTCCATCCCGCTTTCGAT 409 ************ *********************************************** consensus_3295#0 AGAAAACTAAAAAAGTTGAAACACAATCTCTACACGTTTTTCGTCCGTTCAATGTGAAGC 831 consensus_3295#1 AGAAAACTAAAAAAGTTG------------------------------------------ 427 ****************** consensus_3295#0 TGTCGCTGAAGTGGGAGAAGTAGAAAGCAGTCGCCGAGGAGGAGGACGAGGAGGTAGTAA 891 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AACAAAGCAAAAGCTAACGTACCATTTCCTGAGTGTAGTACATTTTCTATATATTATGTT 951 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AGTGGGAAAAGAAGTAGAGCACAGGGGGGTTCTAGCAGTTTGCAGTTTGTTAGGCACGAG 1011 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AAAAGGGGAATCGATGGGCGAACGACTCGTGAGCAATTTTCTGTCCGTGTTGGCACGAAA 1071 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 GTGCGGGACGCGCAAAACCAATCCATTCCAATTTGCAATAAAAGCGATTCCTTCCGTTAC 1131 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AGTGAGTGTGCCCGTGGATGTAGGAGGCCGCTCGTTGAACACACACACACACATACACGC 1191 consensus_3295#1 ------------------------------------------------------------ consensus_3295#0 AAAGTAGGGCGCTAGA 1207 consensus_3295#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||