These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_330#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTATTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAAAAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGAAAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACATGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACACACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCGAGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATGGCGCACTATGTATGGACAGTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGAGTTCGCAACC] [+] EMBL BX621095 [AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTATTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAAAAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGAAAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACATGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACACACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCGAGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATGGCGCACTATGTATGGACAGTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGAGTTCGCAACC] consensusID : consensus_330#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTTTTGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATTGTTACATTTCGAGTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAAGATTAATAATAGGATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAAAAGCAACATAAAAGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGATTATAAAGGAATGAAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAAACAAAACAGAATGGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTTTTTTTGAAGCGCA] [+] EMBL BM625741 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGACGTGTTTGCGTGATGCTACCCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACGTTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATATTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTTTTGCTGCCATTTATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCGCTTCCGATAGAGGGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATTGTTACATTTCGAGTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAAGATTAATAATAGGATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAAAAGCAACATAAAAGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGATTATAAAGGAATGAAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAAACAAAACAGAATGGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTTTTTTTGAAGCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_330#0 AAATTACACACACACATAAATAAAAAAAACGATATACGCTTGAAGAAGAATGCCACACTA 60 consensus_330#1 ------------------------------------------------------------ consensus_330#0 TTTGTCGCGCGGTGCATTCATTCTAAAAACCCAAAAGTTAAATAACGAACAAGAAAAAAA 120 consensus_330#1 ------------------------------------------------------------ consensus_330#0 AAAACAAAACAAAACAAACAAAAAGAATGCATAATTAAAGGTCAAAACAAAGAGGAGCGA 180 consensus_330#1 ------------------------------------------------------------ consensus_330#0 AAATAAATACAACAACAAAACAAAACAAAACATATAACATCACGTAGCAAGTAAGCAACA 240 consensus_330#1 ------------------------------------------------------------ consensus_330#0 TGATCAATGTTAGTCCTATGAGGTAAAGGGGAGAGGATAGTAAAAGTAACACACAAACAC 300 consensus_330#1 ------------------------------------------------------------ consensus_330#0 ACACACAAAAAAGAAAGACAAGACAGCAAATCAGCAAACCTTAGAGCAGCGAAGCAACCG 360 consensus_330#1 ------------------------------------------------------------ consensus_330#0 AGAATAGAAATGGGACGGGGTACGATGGGAGTGTAGAACCCATCAATTAACGATTGTATG 420 consensus_330#1 -----------------------------------------------CCGCGGACGCGTG 13 ** * ** consensus_330#0 G-CGCAC-TATGTATGGACA-GTGTTCTATTGCTTGTGTGACGTGTTTGCGTGATGCTAC 477 consensus_330#1 GGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTG-GGGACGTGTTTGCGTGATGCTAC 72 * ** ** ** **** *** * ** ** * ********************* consensus_330#0 CCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACG 537 consensus_330#1 CCGGTTTTGAGTTTTTTTCCTCTAGAACGAGAACAGAAAAAAAACGAAACGAACGTAACG 132 ************************************************************ consensus_330#0 TTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATA 597 consensus_330#1 TTGTGTTCCTGCTTCACTGTTCGGGGTGAATAATACACCGCTTTGCCCTCTCCTCCCATA 192 ************************************************************ consensus_330#0 TTTCTTGTGCCGTTAGCGTTGAACAGAAGGGTGGAAGTATGACTAGTTTAGCTGCCATTT 657 consensus_330#1 TTTCTTGTGCCGTTAGCGTTGAAAAGAAGCGTGGAGGTATGACTAGTTTTGCTGCCATTT 252 *********************** ***** ***** ************* ********** consensus_330#0 ATTCTATTTCCGAATTGGGATTGTTCGTGATCTGTTGAAGAGCGTTCGCTTCCGATAGAG 717 consensus_330#1 ATTCTATTTCCGAATTGGGATTGTTCGTTATCTGTTGAAGAGCGTTCGCTTCCGATAGAG 312 **************************** ******************************* consensus_330#0 GGAANGGACAAACAAATAATGGAAGCAACNGGGAAAGTTTGTTTGATTGGTACATTTCGA 777 consensus_330#1 GGAAGGGACAAACAAATAATGGAAGCAACGGGGAAAGTTTGTTTGATTGTTACATTTCGA 372 **** ************************ ******************* ********** consensus_330#0 GTTCGCAACC-------------------------------------------------- 787 consensus_330#1 GTTCGCAACCACTACCATTAAAGTCTAACGTTAAGGTGTTGAAGTTAAGATTAATAATAG 432 ********** consensus_330#0 ------------------------------------------------------------ consensus_330#1 GATCGAATCGACAAAAAAAAAAAAAAACAAAGATAACAAACTAAATAAAAGCAACATAAA 492 consensus_330#0 ------------------------------------------------------------ consensus_330#1 AGTAACACAATAGCGAAGAAAGAACTTAAGCGTTGCGTTAGGGTGGATTATAAAGGAATG 552 consensus_330#0 ------------------------------------------------------------ consensus_330#1 AAAGGATAAGCAGAATGATGGGAAGCAACAAAAAACACAGAAAGAAAAACAAAACAGAAT 612 consensus_330#0 ------------------------------------------------------------ consensus_330#1 GGAAATGAGAAGAAAGCGCTGAGAAGTTGTTGCATTGGTTGGTAGTTTTTTTTGAAGCGC 672 consensus_330#0 - consensus_330#1 A 673 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||