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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence
[CCGCTTCAACATGTCGAGAGGTGTACAAACGATTGTTCTCTCTTTCTTCCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAGATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGAAACGATGGTGCAGTATATCCCGGGAAACGGCCTGAATTGCAAGAAGAAGACAGCTAGTTGAGATAGAGTTTTAGATTTCAGACATCCCTTCACCGACTCCACCCGATTCTTCACTGGCATAACACAATCGTTAGTCTTAAGTTTAGCGGTAGAACCGTAACCTAAAAGGGTGTTCGGGACCCCCAACACCTTCCCCCCTCCTCCCCTGTCCTTTTGTGTGTAAGTT]
[+] EMBL BM629879 [CCGCTTCAACATGTCGAGAGGTGTACAAACGATTGTTCTCTCTTTCTTCCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAGATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGAAACGATGGTGCAGTATA ]
[+] EMBL BM644235 [ ccgcccacGCGTCCGCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAGATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGAAACGATGGTGCAGTATATCCCGGGAAACGGCCTGAATTGCAAGAAGAAGACAGCTAGTTGAGATAGAGTTTTAGATTTCAGACATCCCTTCACCGACTCCACCCGATTCTTCACTGGCATAACACAATCGTTAGTCTTAAGTTTAGCGGTAGAACCGTAACCTAAAAGGGTGTTCGGGACCCCCAACACCTTCCCCCCTCCTCCCCTGTCCTTTTGTGTGTAAGTT]
consensusID : consensus_3308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence
[CCGAAACGATTGTTCTCTCTTTCTTTTCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATACTAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAAATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCGGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGACACGATGGTGCAGTATATCC]
[+] EMBL BM624655 [CCGAAACGATTGTTCTCTCTTTCTTTTCTTTTTTGTTGTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAATAATACTAATAAATAAACAATGTGTAAAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTATGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGTATTTAATCGCTAACAAGTAAACGACACTAATTAAGATACTAATACAATACAATATCAATGTACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACAAATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGACACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGATACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTCCTTGCGGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTGATCGCGATCGTGCCACGACACGATGGTGCAGTATATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3308#0 CCGCTTCAACATGTCGAGAGGTGTACAAACGATTGTTCTCTCTTTCTTC-CTTTTTTGTT 59
consensus_3308#1 -----------------------CCGAAACGATTGTTCTCTCTTTCTTTTCTTTTTTGTT 37
********************** **********
consensus_3308#0 GTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACA 119
consensus_3308#1 GTTGTGTGCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA-- 95
**********************************************************
consensus_3308#0 ATAATAATAATAATAATAATAATAATAATAATAATAATACTAATAAATAAACAATGTGTA 179
consensus_3308#1 ----------------TAATAACAATAATAATAATAATACTAATAAATAAACAATGTGTA 139
****** *************************************
consensus_3308#0 AAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTA 239
consensus_3308#1 AAACAACTGATGATGATGATATTTGCTTGACAGTGCGTACAGGAGCGAACTCTGTCTGTA 199
************************************************************
consensus_3308#0 TGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGT 299
consensus_3308#1 TGTTTGTATTGTGCCGAGAGGAGAGCAGTTTGCTGTAACGAAACTCATCCATGTAGTAGT 259
************************************************************
consensus_3308#0 ATTTAATCGCTAACAAGTAAACGACACTAATTAAGATAATAATACAATACAATATCAATG 359
consensus_3308#1 ATTTAATCGCTAACAAGTAAACGACACTAATTAAGATACTAATACAATACAATATCAATG 319
************************************** *********************
consensus_3308#0 TACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACA 419
consensus_3308#1 TACTCGTAAAATAGAACACAAACAACCTTTGAAATATGATATGATCCTAGTGTGTAAACA 379
************************************************************
consensus_3308#0 GATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGAC 479
consensus_3308#1 AATAAACAGAAGAACCGAAAAGAAGGGAAAGAGAGGAAAAGAAATGTATTAAATCATGAC 439
***********************************************************
consensus_3308#0 ACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGAT 539
consensus_3308#1 ACTATTTTAAAAGAAGATACAAAAAACACCCAAACCAATTCATTCGTTTTGCGTAGAGAT 499
************************************************************
consensus_3308#0 ACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTC 599
consensus_3308#1 ACGTTATACTGGGAGGTGAAAGACAGACCAGACAGAGAGGTGCAAGATGATCATATATTC 559
************************************************************
consensus_3308#0 CTTGCAGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTG 659
consensus_3308#1 CTTGCGGTAACACAGTAAATCTCCGACTCAGTAGTAGTAGCAGTTGGTGGAATGGGATTG 619
***** ******************************************************
consensus_3308#0 ATCGCGATCGTGCCACGAAACGATGGTGCAGTATATCCCGGGAAACGGCCTGAATTGCAA 719
consensus_3308#1 ATCGCGATCGTGCCACGACACGATGGTGCAGTATATCC---------------------- 657
****************** *******************
consensus_3308#0 GAAGAAGACAGCTAGTTGAGATAGAGTTTTAGATTTCAGACATCCCTTCACCGACTCCAC 779
consensus_3308#1 ------------------------------------------------------------
consensus_3308#0 CCGATTCTTCACTGGCATAACACAATCGTTAGTCTTAAGTTTAGCGGTAGAACCGTAACC 839
consensus_3308#1 ------------------------------------------------------------
consensus_3308#0 TAAAAGGGTGTTCGGGACCCCCAACACCTTCCCCCCTCCTCCCCTGTCCTTTTGTGTGTA 899
consensus_3308#1 ------------------------------------------------------------
consensus_3308#0 AGTT 903
consensus_3308#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||