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Anopheles gambiae
cluster # 3311 cluster # 3311       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3311#0 length = 698 sequences # 2  
consensus_3311#1 length = 509 sequences # 1  

consensusID : consensus_3311#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence
                              [CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGGCGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGCCGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGCCGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGTGGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCGCGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGGTCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAGCCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGA-CCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA]

[+] EMBL BM634061             [CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGGCGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGCCGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGCCGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGTGGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCGCGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGGTCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAGCCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGA CCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGC                                                                   ]
[+] EMBL BM624542             [                        ccgcccaCGCGTCCGCGATCGCGTAGCGACCGACGGCGGTCGCGGTCGGGCGGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGCCGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGCCGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGTGGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCGCGCGGCCAC TACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGGTCCGCGCGGCGGTGGCGGCGGTAT  GGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACC AGCGGCGCGGGGATAGCCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA]


>consensus_3311#0 CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGG CGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGC CGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGC CGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGT GGCGGCGGATACGGTGGCGACCGGATGGGACCGTTCGGGGGCAATCGGTTCAACAATTCG CGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGGAGG TCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGGCCG CGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGATCGG CGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAGCCG GGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCGC CGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGAC CATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA



consensusID : consensus_3311#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence
                              [CCGCCCACGCTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAAGCGATCGAAGGACGATCACGCGGGCACGGCTGGCGGCGGCACCGGTGGTGGTGGTGCCGCTACCTCGGCCAGCGAGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAAAGTCGTCGCGCCAGCAGCGTCGCTCCTCTTCCGCCGGCAGCCAGCGGTCCAGCGGGTCGACTAAAATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTGAGCAGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGGATCGCATTCCAATAGCGGTGGTGGTGGTGGAGGAGGTAGCGCTATCCCG]

[+] EMBL BM624615             [CCGCCCACGCTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAAGCGATCGAAGGACGATCACGCGGGCACGGCTGGCGGCGGCACCGGTGGTGGTGGTGCCGCTACCTCGGCCAGCGAGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAAAGTCGTCGCGCCAGCAGCGTCGCTCCTCTTCCGCCGGCAGCCAGCGGTCCAGCGGGTCGACTAAAATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTGAGCAGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGGATCGCATTCCAATAGCGGTGGTGGTGGTGGAGGAGGTAGCGCTATCCCG]


>consensus_3311#1 CCGCCCACGCTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCGGGGGGACA GTCGGGAGCGCTCTTCGCCGCCGACCCGCCGCAGCCGGGCGGACAGTCGCGATAATCAGC GCGATCGGGAGGACAGCCGCGACCGTGACCATCGTCATCGGCGCTCGGAGGACCGTGACT CGTCCAAGCGATCGAAGGACGATCACGCGGGCACGGCTGGCGGCGGCACCGGTGGTGGTG GTGCCGCTACCTCGGCCAGCGAGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAA AGTCGTCGCGCCAGCAGCGTCGCTCCTCTTCCGCCGGCAGCCAGCGGTCCAGCGGGTCGA CTAAAATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTG AGCAGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGGATCGCATTCCAATAGCGGTG GTGGTGGTGGAGGAGGTAGCGCTATCCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3311#0      CCGCGCACCCGGAACTATGGAAGCTCGCGGTCGCGCTCGCGATCGCGTAGCGACCGACGG 60
consensus_3311#1      ------------------------------------------------------------
                                                                                  

consensus_3311#0      CGGTCGCGGTCGGGCAGTTTCCGGCGCCGGTTCAGCCGATCGCGGTCCCGTTCGTTTAGC 120
consensus_3311#1      --------------------------------CCGCCCACGCTCCGCCCACGCGTCCGCC 28
                                                      * *** *       ***   ***    *

consensus_3311#0      CGATCGCGCTCCGGCAGCTACTCGCGCAGCCGGTCCCGATCGCGCAGCTTCGAACGGCGC 180
consensus_3311#1      CACGCGTCCGCCCACGCGTCCGCGGGGGGACAGTCGGGAGCGCTCTTCGCCG--CCGACC 86
                      *   **  * **  *   * * ** *  * * ***  ** *** *  *  **  * *  *

consensus_3311#0      CGCTTCGATCGGCGATTCTATCGCGGTGGCCGCGGGGGAGGAGGCGGCGGCGGCGGCGGT 240
consensus_3311#1      CGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGT 146
                      ***  *   ***     *  ***** *   *   * *   * *  * * ** *** * **

consensus_3311#0      GGCGGCGGATACGGTGGCGACCGGATGGGACCGTT-CGGGGGCAATCGGTTCAACAAT-- 297
consensus_3311#1      GACCATCGTCAT--CGGCGCTCGGA--GGACCGTGACTCGTCCAAGCGATCGAAGGACGA 202
                      * *    *  *    ****  ****  *******  *  *  *** ** *  **  *   

consensus_3311#0      TCGCGCGGCCACTTACCGGCGCGGTGGATTCCGCGATTTCAGGGACAACCGGTTCGTGGG 357
consensus_3311#1      TCACGCGGGCACG-GCTGGCG--GCGGCACCGGTGGT----GGTGGTGCCGCTACCTCG- 254
                      ** ***** ***   * ****  * **   * * * *    **     *** * * * * 

consensus_3311#0      AGGTCCGCGCGGCGGTGGCGGCGGTATTGGGGTGGTGGTCGCGATAGGCCACCGTTCCGG 417
consensus_3311#1      --GCCAGCG-AGCGGCGGGACAGTTCGCCGGATTCCCCGCGCGCTGAAAAGTCGTCGCGC 311
                        * * ***  **** **    * *    ** *      **** *       ***  ** 

consensus_3311#0      CCGCGGTATCGCGGACGTTTCCAGCGCTCGTACAGTCGCAGCATGAGCAAATCGCCCGAT 477
consensus_3311#1      CAGCAGCGTCGCTC-CTCTTCCGCCG-----GCAGCCAGCGGTCCAGCGGGTCGACTAA- 364
                      * ** *  ****   *  ****  **      *** *   *    ***   *** *  * 

consensus_3311#0      CGGCGCCCGATCAGCCCGGGCGATGACCGTTCCCGCCACTACCAAGCGGCGCGGGGATAG 537
consensus_3311#1      --AATCCCGCACGACATTGAAGGGCGCTGGGCCGACGATACCGACGCGAAGGAGAGTGAG 422
                           ****  *  *   *  *    * *  **  * *   * * ***  *  * *  **

consensus_3311#0      CCGGGACAGGGGTACGGCCGGGCAGCGGGGGGACAGTCGGGAGCGCTCTTCGCCGCCGAC 597
consensus_3311#1      C--AGAAGAGGCAGCGCCACGATAACGCAGAATCGGGCGG-ATCGCATTCCAATAGCGGT 479
                      *   **   **   ** *  *  * **  *   * * *** * ***  * *     **  

consensus_3311#0      CGCCGCAGCCGGGCGGACAGTCGCGATAATCAGCGCGATCGGGAGGACAGCCGCGACCGT 657
consensus_3311#1      GGTGGTGGTGGAGGAGGTAG---CGCTATCCCG--------------------------- 509
                       *  *  *  * *  *  **   ** **  * *                           

consensus_3311#0      GACCATCGTCATCGGCGCTCGGAGGACCGTGACTCGTCCAA 698
consensus_3311#1      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)