These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 770 fasta sequence [TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTGTGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATTATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACAAACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAATATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGCCAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAACACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT] [+] EMBL BX627256 [TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTGTGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATTATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACAAACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAATATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGCCAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAACACGAGTATACACACTGCCACATGTTT ] [+] EMBL BX628652 [ CAAACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAATATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGCCAATCCAGCGCCGCTGCCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAACACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT] consensusID : consensus_3325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CCGCGGACGCGTGGGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCTCAAAATGATCCAACATTTGTGTAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCCACATCCACTGCCGCTACAACAGAGAGCGTGGATGGTCAACCCAGCGCCGCTGTCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTGCTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATACGCGGCAACGAAACAGACACGAGCAAACACACTGCCACATGTTTCGCCAAACACGAATCAAAAGCAATGTGCGGTTGCGTTCAAAAATTAAGCGATTTCTTTGTAAATACGTACACAAACAATACG] [+] EMBL BM624080 [CCGCGGACGCGTGGGTGGAGCCATTCATACCAGGGTGTAGTATGCGAGTGTTAGTTCTTTTCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAACTGCCTGCGTTTTATACATTCCGAGCTCAAAATGATCCAACATTTGTGTAAAGCACACCGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAATGAGCTAAATGAGGAGATCGTCCCCACATCCACTGCCGCTACAACAGAGAGCGTGGATGGTCAACCCAGCGCCGCTGTCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTGCCTGCACACCCGCAGTGAAGCCTTTGCTCGCAGAGGAGGTGTAGGATATTTATTTAATTACTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATACGCGGCAACGAAACAGACACGAGCAAACACACTGCCACATGTTTCGCCAAACACGAATCAAAAGCAATGTGCGGTTGCGTTCAAAAATTAAGCGATTTCTTTGTAAATACGTACACAAACAATACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3325#0 TACTAACGGTCGATCAATACCTACGAACGAATGAATGAACATGCGCGAGAGCGAGGAGTG 60 consensus_3325#1 ------------------------------------------------------------ consensus_3325#0 TGTGTCTGCATTAAGCGTGAAGTGTGATTGTTGTGAGCAATAATTTATAGACTCGATATT 120 consensus_3325#1 ------------------------------------------------------------ consensus_3325#0 ATGTTAAGAGAGATGATGCAAGCGAGGGAAGGAATATGAATGACAAATGTTCAAAAAACA 180 consensus_3325#1 ------------------------------------------------------------ consensus_3325#0 AACAAAAAAAGCTATACAATAATAGATAGATTGTGTGTTAAGCCCTTTTTTACAAGTCAA 240 consensus_3325#1 ------------------------------------------------------------ consensus_3325#0 TATTCAAAACAATGCTCGTAAAACGGTTCTCACCTTTCGTGGAGCCATTCATACCAGGGT 300 consensus_3325#1 -----------------------CCGCGGACGCGTGG-GTGGAGCCATTCATACCAGGGT 36 * * * * * ********************** consensus_3325#0 GTAGTATGCGAGTGTTAGTTCTTTTCCTATCCTGGACTGTGTTCCACCTAACAGAAGAAA 360 consensus_3325#1 GTAGTATGCGAGTGTTAGTTCTTTTCCTATCCCGGACTGTGTTCCACCTAACAGAAGAAA 96 ******************************** *************************** consensus_3325#0 CTGCCTGCGTTTTATACATTCCGAGCGCAAAATGATCCAACATTTGTGTAAAAAGCACAC 420 consensus_3325#1 CTGCCTGCGTTTTATACATTCCGAGCTCAAAATGATCCAACATTTGTGTAAA--GCACAC 154 ************************** ************************* ****** consensus_3325#0 CGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAAT 480 consensus_3325#1 CGTTTATAAACACTACCACTTAATACTCAGCAACGTAGAACAATTTAGTACAGCCTAAAT 214 ************************************************************ consensus_3325#0 GAGCTAAATGAGGAGATCGTCCCAACATCCACTGCCGCTACAACAGAGAGCGTGGATGGC 540 consensus_3325#1 GAGCTAAATGAGGAGATCGTCCCCACATCCACTGCCGCTACAACAGAGAGCGTGGATGGT 274 *********************** *********************************** consensus_3325#0 CAATCCAGCGCCGCTGCCCAACAATGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTG 600 consensus_3325#1 CAACCCAGCGCCGCTGTCCAACACTGCCCCGTCTAGCGTAATGGCAAGAGCCGGGTGGTG 334 *** ************ ****** ************************************ consensus_3325#0 CCTGCACACCCGCAGTGAAGCCTTTCCTCGCAGAGGANGTGTAGGATATTTATTTAATTA 660 consensus_3325#1 CCTGCACACCCGCAGTGAAGCCTTTGCTCGCAGAGGAGGTGTAGGATATTTATTTAATTA 394 ************************* *********** ********************** consensus_3325#0 CTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATAGGCGGCAACGAAACAAAC 720 consensus_3325#1 CTAGCGTTGTACAACTTACGCACCAGCCAGTGTAAGCCAATACGCGGCAACGAAACAGAC 454 ****************************************** ************** ** consensus_3325#0 ACGAGTATACACACTGCCACATGTTTCGCCAATCACGAATCAAAAGCAAT---------- 770 consensus_3325#1 ACGAGCAAACACACTGCCACATGTTTCGCCAAACACGAATCAAAAGCAATGTGCGGTTGC 514 ***** * ************************ ***************** consensus_3325#0 ------------------------------------------------ consensus_3325#1 GTTCAAAAATTAAGCGATTTCTTTGTAAATACGTACACAAACAATACG 562 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||