These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 969 fasta sequence [TTCGATTAGTTTTTTCTTATTGTTGTCGCTTGTTTCTTATGTTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACGAACCTTTATAGCGAGCTGAATCCACACGAATCGAAACGGTACAGCGAGGACGATATCGAAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGAAAAAAAAAATCTCACACACCATTTCCAGTGACAGTCTGTCCCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGTGAGACATGGTACTTTGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAATGGACAAGAAGGTCCAGGATCAGAGCGTGCACATGACAAACGGTAGCTGTATGTTTATATTCTTAGCCAAGTTTTTCCCCGAAAATGTGGCTGAAGAGCTGGTACAGGAGGTAACGCAGCATCTGTTCTTTCTACAAATAAAACAAGCCATATTGTCGATGGATGTGTACTGTCCGCCGGAGATTCTGTGTTGCTTGCCTCATACGCGGTGCAAGCCAAGTACGGCGATTATGACGAGCAGTATGCAAGCCAGGGATGCTGA] [+] EMBL CNS08S05 [TTCGATTAGTTTTTTCTTATTGTTGTCGCTTGTTTCTTATGTTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACGAACCTTTATAGCGAGCTGAATCCACACGAATCGAAACGGTACAGCGAGGACGATATCGAAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGAAAAAAAAAATCTCACACACCATTTCCAGTGACAGTCTGTCCCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGTGAGACATGGTACTTTGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAATGGACAAGAAGGTCCAGGATCAGAGCGTGCACATGACAAACGGTAGCTGTATGTTTATATTCTTAGCCAAGTTTTTCCCCGAAAATGTGGCTGAAGAGCTGGTACAGGAGGTAACGCAGCATCTGTTCTTTCTACAAATAAAACAAGCCATATTGTCGATGGATGTGTACTGTCCGCCGGAGATTCTGTGTTGCTTGCCTCATACGCGGTGCAAGCCAAGTACGGCGATTATGACGAGCAGTATGCAAGCCAGGGATGCTGA] [+] EMBL BM624048 [ ccgGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTGGCAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACAAACCTTTAT AGCTGAATCCACACGAATCGAAACGGTACAGCGAGGACGATAGCG AAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATTTCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGCGAGACATGGTACTTTGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAAT ] consensusID : consensus_3327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CCGCGGACGCGTGGGTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACAAACCTTTATAGCTGAATCCACACGAATCGAAACGGTACAGCGAGAACGATATCGAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATTTCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGA] [+] EMBL BM643088 [CCGCGGACGCGTGGGTTGCTACGAAGCTGTACCGTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTTGTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCAGTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATACGATACGATTGTTCAAACAAACCTTTATAGCTGAATCCACACGAATCGAAACGGTACAGCGAGAACGATATCGAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAACTCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGAACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAAGCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATTTCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAACAGGTAGATACTTGTTTGAATTAATATGTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3327#0 TTCGATTAGTTTTTTCTTATTGTTGTCGCTTGTTTCTTATGTTTGCTACGAAGCTGTACC 60 consensus_3327#1 -------------------CCGCGGACGCGTG--------GGTTGCTACGAAGCTGTACC 33 * * *** ** * ****************** consensus_3327#0 GTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTT 120 consensus_3327#1 GTCTAGTTTCTGAATATTTGTTGCAAACAGACACGATATAGCAAATGAGATCTATTGTTT 93 ************************************************************ consensus_3327#0 GTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCA 180 consensus_3327#1 GTGTAATTGTTGTGTCTGTTGGTATTTATAGTTTAACAGTATTCTAGAATTACGATCGCA 153 ************************************************************ consensus_3327#0 GTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATA 240 consensus_3327#1 GTATTGCACACCACCTCCCGAGGGTGCTGCAAAACGTCATATAATCACGCATCGCCAATA 213 ************************************************************ consensus_3327#0 CGATACGATTGTTCAAACGAACCTTTATAGCGAGCTGAATCCACACGAATCGAAACGGTA 300 consensus_3327#1 CGATACGATTGTTCAAACAAACCTTTAT----AGCTGAATCCACACGAATCGAAACGGTA 269 ****************** ********* **************************** consensus_3327#0 CAGCGAGGACGATATCGAAAATACAACTACTAGAAACTCGAACCACTAGCGTCCATCAAC 360 consensus_3327#1 CAGCGAGAACGATATCGAAA-TACAACTACTAGAAACTCGAACCACTAGCGTCCATCAAC 328 ******* ************ *************************************** consensus_3327#0 TCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGA 420 consensus_3327#1 TCGCACCCGTACCGGGTTCGTGGTTTCGTTCTCAGTTCCCGACATCAGTTTTATAATTGA 388 ************************************************************ consensus_3327#0 ACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAA 480 consensus_3327#1 ACGACGCAGGACGGGGCGTTTCCGATTAAATTCGGAAGTAAGCTCAAACCACGGAACTAA 448 ************************************************************ consensus_3327#0 GCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGAAAAAAAAAATCTCACACACCATT 540 consensus_3327#1 GCCTGGTCCCTGGTACGATATGATGGTCCCATTTCGACGTAAGAAATCTAACAAACAATT 508 ************************************* ** ****** *** ** *** consensus_3327#0 TCCAGTGACAGTCTGTCCCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAAC 600 consensus_3327#1 TCCAGTGAAAGTATGTACCTTTGATTCGGAGCTTGAATTTCACCTTGAGCACCGAGCAAC 568 ******** *** *** ******************************************* consensus_3327#0 AGGTAGATACTTGTTTGAATTAATATGTCGAACGATCGGCCTGCGTGAGACATGGTACTT 660 consensus_3327#1 AGGTAGATACTTGTTTGAATTAATATGTCGA----------------------------- 599 ******************************* consensus_3327#0 TGGGTTGCAGTTCGAAGATTCCAAAGGAAACCTGTCATGGCTGAAAATGGACAAGAAGGT 720 consensus_3327#1 ------------------------------------------------------------ consensus_3327#0 CCAGGATCAGAGCGTGCACATGACAAACGGTAGCTGTATGTTTATATTCTTAGCCAAGTT 780 consensus_3327#1 ------------------------------------------------------------ consensus_3327#0 TTTCCCCGAAAATGTGGCTGAAGAGCTGGTACAGGAGGTAACGCAGCATCTGTTCTTTCT 840 consensus_3327#1 ------------------------------------------------------------ consensus_3327#0 ACAAATAAAACAAGCCATATTGTCGATGGATGTGTACTGTCCGCCGGAGATTCTGTGTTG 900 consensus_3327#1 ------------------------------------------------------------ consensus_3327#0 CTTGCCTCATACGCGGTGCAAGCCAAGTACGGCGATTATGACGAGCAGTATGCAAGCCAG 960 consensus_3327#1 ------------------------------------------------------------ consensus_3327#0 GGATGCTGA 969 consensus_3327#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||