These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGACCGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGTTCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTGTCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTATCTGTGCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGCCACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCGATCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTGGGCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGAAACCGTACCGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACACCAAAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCGACAACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANTTCGAGCACGAACGATGGANGACTTG] [+] EMBL CF542095 [ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGACCGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGTTCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTGTCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTATCTGTGCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGCCACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCGATCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTGGGCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGAAACCGTACCGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACACCAAAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCGACAACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANTTCGAGCACGAACGATGGANGACTTG] consensusID : consensus_3336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 352 fasta sequence [CTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAGCACAGCGCCAAACGCCATTCCATCAACATACTCCATCCGTAGAGACGCTGCACTGAATCTCGAGCACGAACCGATGGAGGACATGGTGTTCCCGGGCAGCTGGGCCAATTGCCACACGACGCCACACCATTTCCAACATCACGAAAGAGATGNNACGGATGGTTATGAGGACGGCAGCTCGTACACGCACCAGTCAAACTTACAGCGTGATAGGAAATGTGCGCGGAGCACAAACAAACAAAAACCTCCCAAAAGTGTGACCAAAACCCACAAAAACAAAGCCATGAGTAAGAGCAAAAAAAA] [+] EMBL BX620728 [CTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAGCACAGCGCCAAACGCCATTCCATCAACATACTCCATCCGTAGAGACGCTGCACTGAATCTCGAGCACGAACCGATGGAGGACATGGTGTTCCCGGGCAGCTGGGCCAATTGCCACACGACGCCACACCATTTCCAACATCACGAAAGAGATGNNACGGATGGTTATGAGGACGGCAGCTCGTACACGCACC ] [-] EMBL CNS08XHK [ CAACATCACGAAAGAGATGCAACGGATGGTTATGAGGACGGCAGCTCGTACACGCACCAGTCAAACTTACAGCGTGATAGGAAATGTGCGCGGAGCACAAACAAACAAAAACCTCCCAAAAGTGTGACCAAAACCCACAAAAACAAAGCCATGAGTAAGAGCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3336#0 ACGGCCAAATTCAAACGCTGCGAATAGATTCCTCCAGCAATCACAATGTGAATAATCGAC 60 consensus_3336#1 ------------------------------------------------------------ consensus_3336#0 CGAAAAAGCCCGAATCGGTCAAACCACAGATTTACGCGTGTGAGGTGTGCGGCAAGACGT 120 consensus_3336#1 ------------------------------------------------------------ consensus_3336#0 TCAAAACGAAATCCAACTACACCAACCACCGGAAAACGCACAACTGGAGTGAGGCTACTG 180 consensus_3336#1 ------------------------------------------------------------ consensus_3336#0 TCGCGCCAAACAGCACGCCCGTCCAGCAGTCCATGTCCGAGCAGAAGCGTATTTAT-CTG 239 consensus_3336#1 ----------CTCCGC-CGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCTTCCCACAG 49 * * * * **** * * ** * ** * **** ** * * consensus_3336#0 TGCAACATCTGCGGCCATAACTGTGGCTCGTCCAGCAACTTGAGCGTCCATTTGCGACGC 299 consensus_3336#1 CACAGCGCCAAACGCCAT------------TCCATCAACATAC---TCCATCCGTAGAGA 94 ** * * ***** **** **** * ***** * * consensus_3336#0 CACAACGGCCAAGCGTGTGCGAGTGTACGGTGTGCGGGAAAGGCTTTCCACGTCGGTCCG 359 consensus_3336#1 CGCTGCACTGAATCTCGAGCACGAAC-CGATG-GAGGACATGGTGTTCCCGGGCAGCTGG 152 * * * ** * * ** * ** ** * ** * ** **** * * * * consensus_3336#0 ATCTCGTGATGCATATGCGCAAGCATACGGGTGAAAAACCGTACGTCTGCCCTACTTGTG 419 consensus_3336#1 GCCAATTGCCACACG-ACGCCACACCATTTCCAACATCACGAAAGAG-ATGNNACGGATG 210 * ** ** *** * * * * ** * * ** ** consensus_3336#0 GGCGTGGATTTTCACGGCTGGATAAGCTTCGCATCCACATTCGCACACACACGGGAGAGA 479 consensus_3336#1 GTTATGAGGACG-GCAGCTCG-TACACGCACCAGTCAAACTTACA-----GCGTGATAGG 263 * ** * *** * ** * ** ** * * ** ** ** ** consensus_3336#0 AACCGTAC-CGGTGCCCCTGCGGACGGGGATATGCACAGAAAAACGATCTAAAAACACAC 538 consensus_3336#1 AAATGTGCGCGGAGCACAAACAAACAAAAACCT-CCCAAAAGTGTGACCAAAACCCACAA 322 ** ** * *** ** * * ** * * * ** ** ** * *** **** consensus_3336#0 CAAAAACGCAACATTTGCGGACAAAACTTTGACGTTGAAAAACTACTCGCGCCCCGGCCG 598 consensus_3336#1 AAACAAAGCCATGAGTAAGAGCAAAAAAAA------------------------------ 352 ** ** ** * * * ***** consensus_3336#0 ACAACGATCTGCATCAAATCTCCGCCGCGTCAGTCGGCACAGTCCTCCGCTGCAGCGCCT 658 consensus_3336#1 ------------------------------------------------------------ consensus_3336#0 TCCACAGCACAGCGCCAACGCCATCCATCACATACTCATCGTAGAGACGCTGCACTGANT 718 consensus_3336#1 ------------------------------------------------------------ consensus_3336#0 TCGAGCACGAACGATGGANGACTTG 743 consensus_3336#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||