These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3338#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 902 fasta sequence [GGCAGAATTCGGCACGATGGCGGTGATCAGTGAACAGCAAACAGTGACCACAATCACAACACAGCACCAGCAAACAGCATCATAGACGAGTCACGATACTGGTAGTCGAGAAGTGCCCGGAATAAGTTTCGATCGAGTATCGGTGCAGTCCTGCCCGAGCAGGTACCGGAAGCTGGGCGGCGGACCAGGCTTGCTGCGAGGACGATCACAGTCCGTAANACAGGCCACTCGGATCAGATGCGCCAGTTGGATAGCGAAGCATCCGTACATCCGCCGCGTGACCGTCACGGGATGNCGTGCTAATCTGCTGCGCGTTACTGCGCCAGCGCAAGTTCTCCATCACCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGGNCAGACGTTCCCGCACTGGTTCCAGGGGCTGGANCCGTTCGAGAAGACGATNGTTGCGCTCGGCGGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCCAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGAACTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCATGCGACGGAGATGGTGTAGGTGGCCGGCGTGGTACTGAGTCGTGGACTGTTACGAAGNCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCCGAGATGCGCAAGCATTGGGCCGTACATCAGCCACCTGGCTGNCGAATCCGGTGCCGGGAAATTCACCGGTCATCCGGCTGCCGAAAGGGGTGGCCAGCANTCCAATCGGTGGATCTGCTGGTGTGGCCNTACGTCAGGCCCCAAAGCTGACAGCGATNNCGGGTTCGNATGTCCNACGAGNNAGCCAGTTTATCGAAGNNGGTAAAGGCNTACCTTA] [+] EMBL BX468397 [GGCAGAATTCGGCACGATGGCGGTGATCAGTGAACAGCAAACAGTGACCACAATCACAACACAGCACCAGCAAACAGCATCATAGACGAGTCACGATACTGGTAGTCGAGAAGTGCCCGGAATAAGTTTCGATCGAGTATCGGTGCAGTCCTGCCCGAGCAGGTACCGGAAGCTGGGCGGCGGACCAGGCTTGCTGCGAGGACGATCACAGTCCGTAANACAGGCCACTCGGATCAGATGCGCCAGTTGGATAGCGAAGCATCCGTACATCCGCCGCGTGACCGTCACGGGATGNCGTGCTAATCTGCTGCGCGTTACTGCGCCAGCGCAAGTTCTCCATCACCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGGNCAGACGTTCCCGCACTGGTTCCAGGGGCTGGANCCGTTCGAGAAGACGATNGTTGCGCTCGGCGGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCCAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGAACTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCATGCGACGGAGATGGTGTAGGTGGCCGGCGTGGTACTGAGTCGTGGACTGTTACGAAGNCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCCGAGATGCGCAAGCATTGGGCCGTACATCAGCCACCTGGCTGNCGAATCCGGTGCCGGGAAATTCACCGGTCATCCGGCTGCCGAAAGGGGTGGCCAGCANTCCAATCGGTGGATCTGCTGGTGTGGCCNTACGTCAGGCCCCAAAGCTGACAGCGATNNCGGGTTCGNATGTCCNACGAGNNAGCCAGTTTATCGAAGNNGGTAAAGGCNTACCTTA] consensusID : consensus_3338#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 693 fasta sequence [ATCGGCACGAGGGTGNATCGTGAACACAACAGGAACAACACAACACAGCACCAGCAACAGCATCATGACGGTCACGTACGGTGTCGAGAAGTGCCCGGAAAAGTTCGACGAGTATCGGTGCAGCCTGCCCGAGCAGTACCGGAAGCTGGCGGCGGACCAGCTGCGCGAGGACGATCACATCCGCAAGCAGGCCATCGATCAGATGCGCCAGTGGATAGCGAAGCATCCGTACATCCGCCGCTGCCGCACGGATGCCGTGTTTCTGCTGCGCTTTCTGCGCCAGCGCAAGTTCTCCATCCCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGCCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCCGTTCGAGAAGACGATGGTGGCGCTCGGCGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCAAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCTGCGACGAGATGGTGCAGGTGGCCGGCGTGGTACTGATCGTGGACTGTTACGAAGCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCGAGATGCGCAACATTGGGCCGTACATCAAGCACCTGCTGCCGATCCGCTGCCGGGAAAT] [+] EMBL BX469419 [ATCGGCACGAGGGTGNATCGTGAACACAACAGGAACAACACAACACAGCACCAGCAACAGCATCATGACGGTCACGTACGGTGTCGAGAAGTGCCCGGAAAAGTTCGACGAGTATCGGTGCAGCCTGCCCGAGCAGTACCGGAAGCTGGCGGCGGACCAGCTGCGCGAGGACGATCACATCCGCAAGCAGGCCATCGATCAGATGCGCCAGTGGATAGCGAAGCATCCGTACATCCGCCGCTGCCGCACGGATGCCGTGTTTCTGCTGCGCTTTCTGCGCCAGCGCAAGTTCTCCATCCCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCACTTCGCCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCCGTTCGAGAAGACGATGGTGGCGCTCGGCGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCAAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACGACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCTGCGACGAGATGGTGCAGGTGGCCGGCGTGGTACTGATCGTGGACTGTTACGAAGCATCGATGGCACACTTCACGCTGTTCCGGCTGAGCGAGATGCGCAACATTGGGCCGTACATCAAGCACCTGCTGCCGATCCGCTGCCGGGAAAT] [+] EMBL BM622963 [ ccgggaGGTG ATCGTGAACACAACAGGAACAACACAACACAGCACCAGCAACAGCATCATGACGGTCACGTACGGTGTCGAGAAGTGTCCGGAAAAGTTCGACGAGTATCGGTGCAGCCTGCCCGAGCAGTACCGGAAGCTGGCGGCGGACCAGCTGCGCGAGGACGATCACATCCGCAAGCAGGCCATCGATCAGATGCGCCAGTGGATAGCGAAGCATCCGTACATCCGCCGCTGCCGCACGGATGCCGTGTTTCTGCTGCGTTTTCTGCGCCAGCGCAAGTTCTCCATCCCGAAGGCGTGCGAAATGCTGGAACGATATCTAGCCCTTCGCCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCCGTTCGAGAAGACGATGGTGGCGCTCGGCGAGGAGGAGGTGTTCCACGTGCTCGGATTCGACGCCAAGGGCCAGATCGTGATACTGATCAAGTCGCGCAACTTCCGCGTGGACAAGTACGACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCTGCGACGAGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3338#0 GGCAGAATTCGGCACGATGGCGGTGATCAGTGAACAGCAAACAGTGACCACAATCACAAC 60 consensus_3338#1 -------ATCGGCACGAGGGTG--NATC-GTGAACA--CAACAGGAACAACA----CAAC 44 ********* ** * *** ******* ***** ** *** **** consensus_3338#0 ACAGCACCAGCAAACAGCATCATAGACGAGTCACGATACTGGTAGTCGAGAAGTGCCCGG 120 consensus_3338#1 ACAGCACCAGCAA-CAGCATCAT-GACG-GTCACG-TAC-GGT-GTCGAGAAGTGCCCGG 98 ************* ********* **** ****** *** *** **************** consensus_3338#0 AATAAGTTTCGATCGAGTATCGGTGCAGTCCTGCCCGAGCAGGTACCGGAAGCTGGGCGG 180 consensus_3338#1 AA--AAGTTCGA-CGAGTATCGGTGCAG-CCTGCCCGAGCAG-TACCGGAAGCTGG-CGG 152 ** * ***** *************** ************* ************* *** consensus_3338#0 CGGACCAGGCTTGCTGCGAGGACGATCACAGTCCGTAANACAGGCCACTCGGATCAGATG 240 consensus_3338#1 CGGACCAG--CTGC-GCGAGGACGATCACA-TCCGCAAG-CAGGCCATC--GATCAGATG 205 ******** *** *************** **** ** ******* ********* consensus_3338#0 CGCCAGTTGGATAGCGAAGCATCCGTACATCCGCCGCGTGACCGTCACGGGATGNCGTGC 300 consensus_3338#1 CGCCAGT-GGATAGCGAAGCATCCGTACATCCGCCGC--TGCCG-CACGG-ATGCCGTGT 260 ******* ***************************** *** ***** *** **** consensus_3338#0 TAATCTGCTGCGCGTTACTGCGCCAGCGCAAGTTCTCCATCACCGAAGGCGTGCGAAATG 360 consensus_3338#1 T--TCTGCTGCGCTTT-CTGCGCCAGCGCAAGTTCTCCATC-CCGAAGGCGTGCGAAATG 316 * ********** ** ************************ ****************** consensus_3338#0 CTGGAACGATATCTAGCACTTCGGNCAGACGTTCCCGCACTGGTTCCAGGGGCTGGANCC 420 consensus_3338#1 CTGGAACGATATCTAGCACTTCG-CCAGACGTTCCCGCACTGGTTCCAGGGGCTGGACCC 375 *********************** ******************************** ** consensus_3338#0 GTTCGAGAAGACGATNGTTGCGCTCGGCGGAGGAGGAGGTGTTCCACGTGCTCGGATTCG 480 consensus_3338#1 GTTCGAGAAGACGATGGTGGCGCTCGGCG-AGGAGGAGGTGTTCCACGTGCTCGGATTCG 434 *************** ** ********** ****************************** consensus_3338#0 ACGCCCAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACG 540 consensus_3338#1 ACGCCAAGGGCCAGATCGTGATACTGATAAAGTCGCGCAACTTCCGCGTGGACAAGTACG 494 ***** ****************************************************** consensus_3338#0 AACTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCCATGCGACGGA 600 consensus_3338#1 ACCTGGAGGATCTGATACGGTTTCTGCACATGAACATGGAGATTCTGTCC-TGCGACG-A 552 * ************************************************ ******* * consensus_3338#0 GATGGTGTAGGTGGCCGGCGTGGTACTGAGTCGTGGACTGTTACGAAGNCATCGATGGCA 660 consensus_3338#1 GATGGTGCAGGTGGCCGGCGTGGTACTGA-TCGTGGACTGTTACGAAGC-ATCGATGGCA 610 ******* ********************* ****************** ********** consensus_3338#0 CACTTCACGCTGTTCCGGCTGAGCCGAGATGCGCAAGCATTGGGCCGTACATCAGCCACC 720 consensus_3338#1 CACTTCACGCTGTTCCGGCTGAGC-GAGATGCGCAA-CATTGGGCCGTACATCAAGCACC 668 ************************ *********** ***************** **** consensus_3338#0 TGGCTGNCGAATCCGGTGCCGGGAAATTCACCGGTCATCCGGCTGCCGAAAGGGGTGGCC 780 consensus_3338#1 TG-CTGCCGA-TCCGCTGCCGGGAAAT--------------------------------- 693 ** *** *** **** *********** consensus_3338#0 AGCANTCCAATCGGTGGATCTGCTGGTGTGGCCNTACGTCAGGCCCCAAAGCTGACAGCG 840 consensus_3338#1 ------------------------------------------------------------ consensus_3338#0 ATNNCGGGTTCGNATGTCCNACGAGNNAGCCAGTTTATCGAAGNNGGTAAAGGCNTACCT 900 consensus_3338#1 ------------------------------------------------------------ consensus_3338#0 TA 902 consensus_3338#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||