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Anopheles gambiae
cluster # 3343 cluster # 3343       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3343#0 length = 570 sequences # 2  
consensus_3343#1 length = 529 sequences # 1  

consensusID : consensus_3343#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 570
fasta sequence
                              [CCGCTGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGCGCTGATCATAACCTCACTCGACACTGTCACTTCGCTGGTGGCCGGGTGCGTTGTGTTCGGTGTGATTGGTCATCTAGCTCACGTCACCGGTCAGTCGGACATCTCCAAAGTCGTCCAAAGTGGCCCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGACTTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCT-GCTCGGCATTGGTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACATTGCGCGATGGAAGATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCTACATCACACCGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACAGGC]

[+] EMBL BM581199             [CCGCTGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGCGCTGATCATAACCTCACTCGACACTGTCACTTCGCTGGTGGCCGGGTGCGTTGTGTTCGGTGTGATTGGTCATCTAGCTCACGTCACCGGTCAGTCGGACATCTCCAAAGTCGTCCAAAGTGGCCCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGACTTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCT GCTCGGCATTGGTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACATTGCGCGATGGAAGATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCTACATCACACCGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACAGGC]
[+] EMBL BX617401             [                                                                                                                                                                                                                                   CTTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCTGGCTCGG ATTGGTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACC                                                                                                                                                                                                                                            ]


>consensus_3343#0 CCGCTGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGCGCTG ATCATAACCTCACTCGACACTGTCACTTCGCTGGTGGCCGGGTGCGTTGTGTTCGGTGTG ATTGGTCATCTAGCTCACGTCACCGGTCAGTCGGACATCTCCAAAGTCGTCCAAAGTGGC CCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGACTTTCTGCCGCAG TTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCTGCTCGGCATTGGTACGCTGATCGGT ATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACATTGCGCGATGGAAG ATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCTACATCACACCGGGT GGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTG GCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGAC ATTGAGTTCATGCTCGGCATCAAGACAGGC



consensusID : consensus_3343#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence
                              [CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCGTTTGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCCAGTACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTTCTGTCTGTTATTTTGTAATTATTATTAATTTTAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTCTCGGCTGGTGTCTGTACGCGTTTGCCGTTCTGCAGCTGCCCTGCTGGGCCGTTTACGCCATTCTGCAGAAGCAGGGCCTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGCGACCCATGGCCGACTGGGGCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCACTTTCATCGAGGA]

[+] EMBL BM581053             [CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCGTTTGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCCAGTACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTTCTGTCTGTTATTTTGTAATTATTATTAATTTTAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTCTCGGCTGGTGTCTGTACGCGTTTGCCGTTCTGCAGCTGCCCTGCTGGGCCGTTTACGCCATTCTGCAGAAGCAGGGCCTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGCGACCCATGGCCGACTGGGGCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCACTTTCATCGAGGA]


>consensus_3343#1 CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTG GTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAAT CGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCGTT TGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCCAG TACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTTCTGTCTGTTATTT TGTAATTATTATTAATTTTAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTCTCGGCTGGT GTCTGTACGCGTTTGCCGTTCTGCAGCTGCCCTGCTGGGCCGTTTACGCCATTCTGCAGA AGCAGGGCCTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGCGACCCATGGCCGACTGGG GCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCACTTTCATCGAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3343#0      CCGC----TGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGC 56
consensus_3343#1      CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTAC--GGCGCCACGC 58
                      ****    * *  **   **  ** *       ** **  *  *  *     ***** **

consensus_3343#0      -GCTGATCATAACCTCACTCGACACTGT-CACTTCGCTGGTGGCCGGGTGCGTTGTGT-- 112
consensus_3343#1      TGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGA 118
                       * * * ******      ** *   *  *   ** *   ** * ** *   * * **  

consensus_3343#0      --TCGGTGTGATTGGTCATCTAGCTCACG-TCACCGGTCAGTCGGACATCTCCAAAGTCG 169
consensus_3343#1      ATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCG 178
                          *** **   ** ***  ** *** * **  *    ** *** * * *       **

consensus_3343#0      TCCAAAGTGGCCCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGAC- 228
consensus_3343#1      TTTGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCC 238
                      *     * ***   *      *  ***             *  * *** **  ** * * 

consensus_3343#0      --TTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCTGCTCGGCATTG 286
consensus_3343#1      AGTACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTT-CTGTCTGTTA 297
                        *    *******    ** ** *    * *        *  * ** * **     ** 

consensus_3343#0      GTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACA 346
consensus_3343#1      TTTTG-TAATTATTAT--TAATTT---TAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTC 351
                       *  * * **   ***  ***  *   * * *     * ***    **   *  * *   

consensus_3343#0      TTGCGCGATGGAAGATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCT 406
consensus_3343#1      TCGGCTGGTGTCTGTACGCGTTTGCCGTTCTGC-AGCT--GCCCTGC--TGGGCCG-TTT 405
                      * *   * **   *  ** * *  * **   ** ***   *  ****  ****  * * *

consensus_3343#0      ACATCACACCGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGG 466
consensus_3343#1      ACGCCATTCTGCAGAAGCAGGGC---CTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGC 462
                      **  **  * *        *  *   **** *  *  ****  ** *   ***   *** 

consensus_3343#0      TAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATC 526
consensus_3343#1      GACCCAT------GGCCGACTGGGGCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCA 516
                       * ****      ***** **  *  * *     *  * **  *   *  *         

consensus_3343#0      GGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACAGGC 570
consensus_3343#1      CTTTCATCGAGGA------------------------------- 529
                         **  * ****                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)