These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 570 fasta sequence [CCGCTGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGCGCTGATCATAACCTCACTCGACACTGTCACTTCGCTGGTGGCCGGGTGCGTTGTGTTCGGTGTGATTGGTCATCTAGCTCACGTCACCGGTCAGTCGGACATCTCCAAAGTCGTCCAAAGTGGCCCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGACTTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCT-GCTCGGCATTGGTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACATTGCGCGATGGAAGATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCTACATCACACCGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACAGGC] [+] EMBL BM581199 [CCGCTGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGCGCTGATCATAACCTCACTCGACACTGTCACTTCGCTGGTGGCCGGGTGCGTTGTGTTCGGTGTGATTGGTCATCTAGCTCACGTCACCGGTCAGTCGGACATCTCCAAAGTCGTCCAAAGTGGCCCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGACTTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCT GCTCGGCATTGGTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACATTGCGCGATGGAAGATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCTACATCACACCGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACAGGC] [+] EMBL BX617401 [ CTTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCTGGCTCGG ATTGGTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACC ] consensusID : consensus_3343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCGTTTGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCCAGTACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTTCTGTCTGTTATTTTGTAATTATTATTAATTTTAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTCTCGGCTGGTGTCTGTACGCGTTTGCCGTTCTGCAGCTGCCCTGCTGGGCCGTTTACGCCATTCTGCAGAAGCAGGGCCTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGCGACCCATGGCCGACTGGGGCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCACTTTCATCGAGGA] [+] EMBL BM581053 [CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCGTTTGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCCAGTACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTTCTGTCTGTTATTTTGTAATTATTATTAATTTTAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTCTCGGCTGGTGTCTGTACGCGTTTGCCGTTCTGCAGCTGCCCTGCTGGGCCGTTTACGCCATTCTGCAGAAGCAGGGCCTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGCGACCCATGGCCGACTGGGGCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCACTTTCATCGAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3343#0 CCGC----TGATCGTATATTCGTCCTTTAACGACTTCTCCAACAACATCTACCGCCATGC 56 consensus_3343#1 CCGCAACATTAGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTAC--GGCGCCACGC 58 **** * * ** ** ** * ** ** * * * ***** ** consensus_3343#0 -GCTGATCATAACCTCACTCGACACTGT-CACTTCGCTGGTGGCCGGGTGCGTTGTGT-- 112 consensus_3343#1 TGGTAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGA 118 * * * ****** ** * * * ** * ** * ** * * * ** consensus_3343#0 --TCGGTGTGATTGGTCATCTAGCTCACG-TCACCGGTCAGTCGGACATCTCCAAAGTCG 169 consensus_3343#1 ATCGGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACGGGCCTGTTTTGGCGCG 178 *** ** ** *** ** *** * ** * ** *** * * * ** consensus_3343#0 TCCAAAGTGGCCCAGCCCTTACCTTCATCACCTACCCGGACACGATCGCCAAGTTTGAC- 228 consensus_3343#1 TTTGCTGGGGCATCGTGACGCCTATCACGGTGCTGTTCATCCTGCTCGTCAGCTTGGTCC 238 * * *** * * *** * * *** ** ** * * consensus_3343#0 --TTTCTGCCGCAGTTCTTCTCGGTGCTATTCTTCTTCATGCTGTTCCTGCTCGGCATTG 286 consensus_3343#1 AGTACAAGCCGCAGAATGTCCCGCTCGGTTACAATGGTGAGTCGATCTT-CTGTCTGTTA 297 * ******* ** ** * * * * * ** * ** ** consensus_3343#0 GTACGCTGATCGGTATCGTAACGTCCGTGATTACCGCCATCCACGACCAGCGGCCGGACA 346 consensus_3343#1 TTTTG-TAATTATTAT--TAATTT---TAAATCTTCTCCTCCTTCTCCTCTGTGCAGCTC 351 * * * ** *** *** * * * * * *** ** * * * consensus_3343#0 TTGCGCGATGGAAGATCGTGATCTCGGTCGGGCTAGCAGGGTTCTGCATTGGGTTGGTCT 406 consensus_3343#1 TCGGCTGGTGTCTGTACGCGTTTGCCGTTCTGC-AGCT--GCCCTGC--TGGGCCG-TTT 405 * * * ** * ** * * * ** ** *** * **** **** * * * consensus_3343#0 ACATCACACCGGGTGGTTTGATCATACTGGAGCTGCTGGATTACTACGGCGCCACGCTGG 466 consensus_3343#1 ACGCCATTCTGCAGAAGCAGGGC---CTGGTGTGGTGGGATCGCTGCAAAGCCGTCCTGC 462 ** ** * * * * **** * * **** ** * *** *** consensus_3343#0 TAACCATAACGCTGGCCGTCTTCGAGCTGCTCACCTTTGCCTGGATCTATGGCGTGAATC 526 consensus_3343#1 GACCCAT------GGCCGACTGGGGCCCGGAAGACCCTACCAAGCGGTCCGAGTACGGCA 516 * **** ***** ** * * * * * ** * * * consensus_3343#0 GGGTCTGCAAGGACATTGAGTTCATGCTCGGCATCAAGACAGGC 570 consensus_3343#1 CTTTCATCGAGGA------------------------------- 529 ** * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||