These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 627 fasta sequence [GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCACAGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTTATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAAGAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTAGATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGATCACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACATTTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATCCTCCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAACAGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCACATCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGATTCGTTCTGAAAGCGAGATAAAAACTGA] [+] EMBL AGA281767 [GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCACAGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTTATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAAGAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTAGATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGATCACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACATTTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATCCTCCAACGTAGCGGGT ] [+] EMBL BX619179 [ ntnCACAGATCACTCAATTTTTACCTCTATACAAACCATATTAATGAATATAACAACCACTCACTTACATTTAATGTGTATTTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTGGAAATCCTTCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAACAGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCACATCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGATTCGTTCTGAAAGCGAGATAAAAACTGA] consensusID : consensus_3345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [TTTTTTTTGGGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTTCTTTTCTTGACTTGCATTTTTCTTCAATTACACATACTGTGGTTGGAAGAGTCTTTATAATGGGGGTAGCTTTAAACGTTTCTTAAACTGTATGTTCTTTGCAGTGAGCTACAGGTAAGTATGTGTATTGTAAGGATGTGGTGAATAATTGCTTCTACGCGCCTGTCTATGCTGGGATTTTTCTCTCTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACAAATCCAATCAACA] [+] EMBL AGA280070 [TTTTTTTTGGGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTTCTTTTCTTGACTTGCATTTTTCTTCAATTACACATACTGTGGTTGGAAGAGTCTTTATAATGGGGGTAGCTTTAAACGTTTCTTAAACTGTATGTTCTTTGCAGTGAGCTACAGGTAAGTATGTGTATTGTAAGGATGTGGTGAATAATTGCTTCTACGCGCCTGTCTATGCTGGGATTTTTCTCTCTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACAAATCCAATCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3345#0 GTAACACACGGTGAAAACAGTGCAGCAAAACCGATAATATTCACTTAATTATACAGGCAC 60 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 AGGCGTAGCCAACAATATTTTAAAGTTGTTAAGTAACGTAGGAAAGCAGTATGGCACCTT 120 consensus_3345#1 ----------------------------------------------------------TT 2 ** consensus_3345#0 ATTTGTGTGGAAGGATGTTTTTTAAACTATGCAGTACTTTACTTTATTCCTCCACATTAA 180 consensus_3345#1 TTTTTTG-GGCGTCTTAACTCAAAATCTATTCCTTTATTCGCTTTGAATTTTT-CTTTTC 60 *** ** ** * * ** **** * * ** **** * * ** consensus_3345#0 GAGATATGCGAAGGATATCAGAATGGATAGAATAAACTGATGACAGCAACATCCATTGTA 240 consensus_3345#1 TTGACTTGCATTTTTCTTCA------ATTACACATACTG-TGGTTGGAAGAGTCTTTATA 113 ** *** *** ** * * **** ** * ** * * ** ** consensus_3345#0 GATTATAAGAATATGTGCTCATGGCTACAATATTATACTGGAGACTATTGATTCACAGAT 300 consensus_3345#1 ----ATGGGGGTA-GCTTTAAACGTTTC----TTAAACTGTATGTTCTT--TGCAGTGAG 162 ** * ** * * * * * * *** **** * * ** * ** ** consensus_3345#0 CACTCAATTTTTACCTCTATACAAACCATATTAATGAATA-TAACAACCACTCACTTACA 359 consensus_3345#1 CTACAGGTAAGTATGTGTATTGTAAGGATGT-GGTGAATAATTGCTTCTACGCGCCTGTC 221 * * ** * *** ** ** * ****** * * * ** * * * consensus_3345#0 TTTAATGTGTATCTTTTCAATATCTAAGCCCCTTTGAAAGTTCATTGAATGTTAAAAATC 419 consensus_3345#1 TATGCTGGGATTTTTCTCTCTTTTTGGTTCTCCTTCAGTTTTTATCTCGCTTTCAGAACA 281 * * ** * * ** ** * * * * * ** * ** ** ** * ** consensus_3345#0 CTCCAACGTAGCGGGTGAAAGCCCTTAGCGCAGGAGTGAACAAACAGCCGAGAACAAAAA 479 consensus_3345#1 AATCCAATCAACA----------------------------------------------- 294 * * * * consensus_3345#0 CAGAAAACAAACAATACACATTTACATATTATACTTTCACAAGCCAAAAAAGTATATCAC 539 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 ATCCAACCTTGNACATTTAGCCTATATAGTACATGTATTACACAGCAGTTGTTGATTGGA 599 consensus_3345#1 ------------------------------------------------------------ consensus_3345#0 TTCGTTCTGAAAGCGAGATAAAAACTGA 627 consensus_3345#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||