These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [CATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCCCGCAGGCCTGTGCCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCCTGCCCCGTCAGCAGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTCACCTCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGGTTCTTGGTGTTCTTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGCCCGTTGATCGCGATGATCTGGTCGCCGATGTTCAGCTGG] [+] EMBL AGA281795 [CATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCCCGCAGGCCTGTGCCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCCTGCCCCGTCAGCAGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTC ] [-] EMBL AGA280098 [ CGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGCAGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATGCGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATCACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTCACCTCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGGTTCTTGGTGTTCTTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGCCCGTTGATCGCGATGATCTGGTCGCCGATGTTCAGCTGG] consensusID : consensus_3348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 167 fasta sequence [GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG] [-] EMBL BM603226 [GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGATAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTAACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3348#0 ------------------------------------------------CATTAAGTAAGA 12 consensus_3348#1 GTCACTTTATTGTAATGAACAAGAAGGTTTTAACAATGTTGTTGCTCCCATTAAGTAAGA 60 ************ consensus_3348#0 TAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTA 72 consensus_3348#1 TAATAGGTGCCATCATCAGCAATAGTGAAGGGAGAGAGGGTAACAGCGAAATTGATCCTA 120 ************************************************************ consensus_3348#0 ACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTTGCCCCCCCCCCCGCAGGCCTGTG 132 consensus_3348#1 ACGGCGTGTACGGGGGTGCGGTGGCGTGTCGCGTCTAGAACTAGCGG------------- 167 ************************************ * * * consensus_3348#0 CCCAGGGTTTGTGTGTGTGTGTGGGCCTAAATGTAGATCGGATTCTCCTGCCCCGTCAGC 192 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 AGCCGAAACATGGACGTCGGCATGGTTTTCATCAGTATCTCTCCGATCGATGTGGCGAGC 252 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 AGGTTCACAATCTTTTCGTGCGGTACCGCGACGACGCTTTGGTTGTTGATCTCGATGATG 312 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 CGGTGGCCCACGCGAACACCGCCCCGCTCCGCAATTCCTCCGCGCAGCAGGCTGCAAATC 372 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 ACACCGTTCTGTACGCTGAAGCCGAGCTGGTACTTGGTGTTCGGGCGCTTGATCTTCACC 432 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 TCCACGACCGGCGCGCACGGCACGACCGTGAACTTCACCACCGTCTGGTTCTTGGTGTTC 492 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 TTGATGTACCCCTGGCAGGTGGAGAGCGGCAGCCCGACCAGGCTCAGCCCGTTGATCGCG 552 consensus_3348#1 ------------------------------------------------------------ consensus_3348#0 ATGATCTGGTCGCCGATGTTCAGCTGG 579 consensus_3348#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||