These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 383 fasta sequence [CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAA-TTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTTTTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTAGTCGTAAAAAAAA] [+] EMBL BM622415 [CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAA TTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTTTTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTAGTCGT ] [-] EMBL AGA280144 [ TGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTTTTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTAGTTGTAAAAAAAA] consensusID : consensus_3353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [CCGCCCACGCGTCCGTTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTA] [+] EMBL BM586487 [CCGCCCACGCGTCCGTTCGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGAATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTTCGGCTGTATTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGCTTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACGTCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAAGAACATTCTTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3353#0 CCGGTCAAGATTTGTACGCGAAAAATTCCTATTTTAAACAGCATCTACATGATGGCGATT 60 consensus_3353#1 ----------------------------------------CCGCCCACGC---GTCCGTT 17 * * ** * * ** consensus_3353#0 CGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGAAGTGA 120 consensus_3353#1 CGGCTGATTTGATTGAATGCAAACAAATGGATGTATTCTTGTTAGGAGCGCAGGGAGTGA 77 ****************************************************** ***** consensus_3353#0 ATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTT--CGGCTGTA 178 consensus_3353#1 ATGATTACATGTACATCAACAAAACCTCGTAAATTCGTGACAATTTTTTTTTCGGCTGTA 137 ************************************************** ******** consensus_3353#0 TTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGC 238 consensus_3353#1 TTATAACGATAAATTTGATTGCAATAATGAATATGGAATCATTTCTACATCATGCAATGC 197 ************************************************************ consensus_3353#0 TTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACG 298 consensus_3353#1 TTAGAACACACTAGCTGTAGGAGTTATCGTATACAGAGGGCGCTTAGTTTTATCTCAACG 257 ************************************************************ consensus_3353#0 TT-TTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAA 357 consensus_3353#1 TCATTAATTTCAACTCATATTTATGCAACGTAAAATCTTTTCTGAATTAATACAAATAAA 317 * ********************************************************* consensus_3353#0 GAACATTCTTTTAGTCGTAAAAAAAA 383 consensus_3353#1 GAACATTCTTTTA------------- 330 ************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||