These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 702 fasta sequence [CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT] [+] EMBL BM632845 [CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT] [+] EMBL BM622167 [ ccggggcatCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACT GGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAA CCCGACCCGGCTCGCCCA ] consensusID : consensus_3355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG] [+] EMBL BM644081 [CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3355#0 ----------CCGCCCAC-GCGTCCG-----CCTGGGCATCCGTGAACGTGCCAGCAGAA 44 consensus_3355#1 CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAA 60 ****** *** * ***************************** consensus_3355#0 GTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG 104 consensus_3355#1 GTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG 120 ************************** ********************************* consensus_3355#0 CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC 164 consensus_3355#1 CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC 180 ************************************************************ consensus_3355#0 TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA 224 consensus_3355#1 TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA 240 ************************************************************ consensus_3355#0 GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC 284 consensus_3355#1 GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC 300 ************************************************************ consensus_3355#0 TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG 344 consensus_3355#1 TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG 360 ************************************************************ consensus_3355#0 CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC 404 consensus_3355#1 CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC 420 ************************************************************ consensus_3355#0 GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC 464 consensus_3355#1 GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC 480 ************************************************************ consensus_3355#0 GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA 524 consensus_3355#1 GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA 540 ************************************************************ consensus_3355#0 TACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGG 584 consensus_3355#1 TACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG----------------- 583 ****** ************************************ consensus_3355#0 GGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGG 644 consensus_3355#1 ------------------------------------------------------------ consensus_3355#0 GTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT 702 consensus_3355#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||