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Anopheles gambiae
cluster # 3355 cluster # 3355       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3355#0 length = 702 sequences # 2  
consensus_3355#1 length = 583 sequences # 1  

consensusID : consensus_3355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 702
fasta sequence
                              [CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT]

[+] EMBL BM632845             [CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT]
[+] EMBL BM622167             [      ccggggcatCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACT GGGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAA CCCGACCCGGCTCGCCCA                           ]


>consensus_3355#0 CCGCCCACGCGTCCGCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTT TTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTG CAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGC AAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCA CGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGA TCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGG ACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAA CCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACG TCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACAACTATGCCG ACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGGGGAAGATCCAATGAAT CGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGGGTACATCATCAACCCC GACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT



consensusID : consensus_3355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 583
fasta sequence
                              [CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG]

[+] EMBL BM644081             [CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAAGTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAGCAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGCTACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACAGAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTCTGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAGCAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACCGAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAACGAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGATACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG]


>consensus_3355#1 CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAA GTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA TACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3355#0      ----------CCGCCCAC-GCGTCCG-----CCTGGGCATCCGTGAACGTGCCAGCAGAA 44
consensus_3355#1      CCGCAAGACAACGCCCAAAGCGGTTGGGCATCCTGGGCATCCGTGAACGTGCCAGCAGAA 60
                                 ******  ***   *     *****************************

consensus_3355#0      GTGCAGAAATAGTGTTTTACCTATAAACCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG 104
consensus_3355#1      GTGCAGAAATAGTGTTTTACCTATAAGCCTTTGGTCCGAGTGAAATTGTGTGTGGAATAG 120
                      ************************** *********************************

consensus_3355#0      CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC 164
consensus_3355#1      CAGTGAGAAAGGAGTGCAGTGAGTGGTGGAGTCCTGTAGAACAGACAGTGTAGTGGGAGC 180
                      ************************************************************

consensus_3355#0      TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA 224
consensus_3355#1      TACCGGAAGCTCCAGCAAATTATTTGCCCCGTACCGGTGCCCAACTTCAACAAGCAAACA 240
                      ************************************************************

consensus_3355#0      GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC 284
consensus_3355#1      GAACGCGTCCCCGGCACGCGCAGCACAGCCATGCGGTGGAAGTTACTTCTGCTGCTTTTC 300
                      ************************************************************

consensus_3355#0      TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG 344
consensus_3355#1      TGTGCGGTATCGCTGATCTCCCTATCAACCAGTGCCGCCGCAGAGGAGCACGAGCAAGAG 360
                      ************************************************************

consensus_3355#0      CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC 404
consensus_3355#1      CAGGATGACGCAACGGACGACGACTACGATGCGGTAGCGGCAGAGAATGAGGAGCAAACC 420
                      ************************************************************

consensus_3355#0      GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC 464
consensus_3355#1      GAACCGGAGGAGCAAACCGATCCAAGCGACGAACCGGAAGACACCGATCAAAAAACGAAC 480
                      ************************************************************

consensus_3355#0      GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA 524
consensus_3355#1      GAGGACGTGATCGACGTCGACACGGACGCAGTGGACGAGGGCAAGGATAAGAAGGGCAGA 540
                      ************************************************************

consensus_3355#0      TACTACAACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCGACTCCAACTACAACTGG 584
consensus_3355#1      TACTACGACTATGCCGACTTTCTGTCGGAGCTCGATATGTCCG----------------- 583
                      ****** ************************************                 

consensus_3355#0      GGAAGATCCAATGAATCGCGTCCAGCCGAAGGAACCGCCGACCCACAGCATCGACGGTGG 644
consensus_3355#1      ------------------------------------------------------------
                                                                                  

consensus_3355#0      GTACATCATCAACCCCGACCCGGCTCGCCCAGATCCGGCGCAACTTCCTGTACCCGTT 702
consensus_3355#1      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)