Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3358 cluster # 3358       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3358#0 length = 512 sequences # 2  
consensus_3358#1 length = 434 sequences # 1  

consensusID : consensus_3358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 512
fasta sequence
                              [GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAAGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGT]

[+] EMBL BX613379             [GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAAGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATA          ]
[+] EMBL BM644356             [                                                                                                           ccgGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACA  ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATATAAGTGCGCAGGAAACGCAAGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGT]


>consensus_3358#0 GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAA AAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGC ATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACC AATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACA ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAAC GCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCA AGTGGATGGGAGAGGGGGTGGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAG TCAATAAAGAGGAAACATGATACACATTCTGT



consensusID : consensus_3358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [CCGACTTAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAGGTGGATGGGAGAGGGGGGTGGAGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGTACAGTT]

[+] EMBL BM621851             [CCGACTTAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGTGGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACCAACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAGGTGGATGGGAGAGGGGGGTGGAGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACACATTCTGTACAGTT]


>consensus_3358#1 CCGACTTAAAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGT GGAAGTGCATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAA CACGAACCAACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATA CAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACCCAAAAACTAAAAATCAAACGCGCCCGAAGAAGCGAAGAAGCTCTG CAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCAGGTGGATGGGAGAGGGGGGTGGAGGG GTGCATCCCACTCCCACCCTTTTTCGAAGTTCGAAGTCAATAAAGAGGAAACATGATACA CATTCTGTACAGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3358#0      GTCAATAAAGTGTGCCACAGCTATGAGATCTACTGGAAAACCCTGCATGGATACCACTAA 60
consensus_3358#1      ----------------------------------------------------CCGACTTA 8
                                                                           * *** *

consensus_3358#0      AAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAACAGTGTGGAAGTGC 120
consensus_3358#1      AAGCAACCCAAAACGTTACAAACGTCTTTTCCAAGAAAGCAGCGAGCAGTGTGGAAGTGC 68
                      ********************************************* **************

consensus_3358#0      ATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACC 180
consensus_3358#1      ATCATTCAACGGCAAGCTGCACAGTAACGAACACACAAACACCTCCACCAAACACGAACC 128
                      ************************************************************

consensus_3358#0      AATTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACAACA 240
consensus_3358#1      AACTAACCAACCAAACAGCGCCACCCCAAAAAAATCACTATTCTACTCTATACAACA--- 185
                      ** ******************************************************   

consensus_3358#0      ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC 300
consensus_3358#1      -------------------------------CACACACACACACACACACACACACACAC 214
                                                     *****************************

consensus_3358#0      ACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAAC 360
consensus_3358#1      ACACACACACACACACACACACACACACACACACACACACCCAAAAACTAAAAATCAAAC 274
                      ************************************************************

consensus_3358#0      GCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCA 420
consensus_3358#1      GCGCCCGAAGAAGCGAAGAAGCTCTGCAGAAAAGTGCTATAAAAGTGCGCAGGAAACGCA 334
                      ************************************************************

consensus_3358#0      AGTGGATGGGAGAGGGGGT--GGGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGA 478
consensus_3358#1      GGTGGATGGGAGAGGGGGGTGGAGGGGTGCATCCCACTCCCACCCTTTTTCGAAGTTCGA 394
                       *****************   * *************************************

consensus_3358#0      AGTCAATAAAGAGGAAACATGATACACATTCTGT------ 512
consensus_3358#1      AGTCAATAAAGAGGAAACATGATACACATTCTGTACAGTT 434
                      **********************************      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)