These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTGAAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAGATTGTTTGTCAGCGG] [+] EMBL BM626649 [CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTGAAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAGATTGTTTGTCAGCGG] consensusID : consensus_3364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 474 fasta sequence [GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAG-ACTGTGAAGTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT] [+] EMBL BM621721 [GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAG ACTGTGAAGTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCTCTGGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAAGTCAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTCGGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT] [+] EMBL CNS08UYO [ AGAAGACGACCTCAGAATGATAGTTCTCTTGGTTTTTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTGATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAGCACTGTGAAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGATGCTCACGAGACGAGCAATGTGTCGCCGCA GGCAGAAGTGTGTTCTGTGTGACTGTTTCTCTGGCTGCAATGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3364#0 CCGCCCACGCGTCCGCCCACGCGTCCGAAGACGACCTCAAAATGATAGTTCTCTTGGTTT 60 consensus_3364#1 --GTCCGGCTGTTCGAAACGTCGTAAGAAGACGACCTCAGAATGATAATTCTCTTGGTTT 58 * ** ** ** *** ************* ******* ************ consensus_3364#0 TTTTACTCTTCGTCAAGCTTGTTACTTCT----ATGATCGGTTTTTTTGCCACACGTGTG 116 consensus_3364#1 TTTTACTCTTCGTCAAGCTTGTTACTTCTGCGGATGATCGGTTTTTTTGCCACACGTGTG 118 ***************************** *************************** consensus_3364#0 ATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACCAAAGACTGTG 176 consensus_3364#1 ATTCTTCAAACTACAAGGAGTGTGTCTGGACGCCTTCCACCTCTCTCACGAAAGACTGTG 178 ************************************************* ********** consensus_3364#0 AAGTGGGTGATCATGCTTGCGCAACTGTTATCCTACCCAACGGTCACACCTATCGCGGAT 236 consensus_3364#1 AAGTGGGTGATCATGCTTGCGGAACTGTTATCCTACCCAACGGTCACACCTATCGCGGAT 238 ********************* ************************************** consensus_3364#0 GCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCT 296 consensus_3364#1 GCTCACGAGACGAGCAATGTGTCGCCGCAGGGCAGAAGTGTGTTCTGTGTGACCGTTTCT 298 ************************************************************ consensus_3364#0 CTGGCTGCAATGTCGATCGTTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAA 356 consensus_3364#1 CTGGCTGCAATGTCGATCGCTATCCATCTGATCGCCTACGGTGCAACATCTGTCAGTCAA 358 ******************* **************************************** consensus_3364#0 GTCAATCAAACTCCTGTAAGCTGTTACCCTATACGAGACAGTTTGAGAAACCCTGCATTC 416 consensus_3364#1 GTCAATCAAACTCCTGTAAGCTGTTACCCTATCCGAGACAATTTGAGAAACCCTGCATTC 418 ******************************** ******* ******************* consensus_3364#0 GGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTATCGAG 476 consensus_3364#1 GGTTCGTGACAGACGATCGTTGTGTAAGTGTGTTCGATGGTTTCAATGTGTCCTAT---- 474 ******************************************************** consensus_3364#0 ATTGTTTGTCAGCGG 491 consensus_3364#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||