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Anopheles gambiae
cluster # 3365 cluster # 3365       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3365#0 length = 1176 sequences # 1  
consensus_3365#1 length = 697 sequences # 2  

consensusID : consensus_3365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1176
fasta sequence
                              [CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGACGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGTGCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGGGCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGAAGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT]

[+] EMBL BX469265             [CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGACGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGTGCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGGGCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGAAGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT]


>consensus_3365#0 CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGA CGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGT GCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGG GCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCG GAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTC GATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGC GCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGT CGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGC CNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGN NNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNC CGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGA AGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGN GCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGC CANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCG ACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCT GCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATC GAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGA GGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGG TCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGN GCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT



consensusID : consensus_3365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 697
fasta sequence
                              [CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA]

[+] EMBL BM621665             [CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGC                      ]
[+] EMBL BM642365             [                    ccgGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACTGTGGCCAGCAGCAACTTCCAGCGTAATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCTGCCAACGAATCCACACACCTCCGAATTTTTCCCTGTGTTTCGTACGGTTTTGTCTCGCTGGGATAGATTTTCACAACCCCTCAACATCGCTCATTTTCCGACACCTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGACGAAGATACGTACGGCGAAGAGAACGACAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA]


>consensus_3365#1 CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAA CATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACC CGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCT GTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCAT TTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTT CAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGG AGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACAT CGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGA AGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCA CGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGT ACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGG ACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3365#0      CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGA 60
consensus_3365#1      ------------------------------------------------------------
                                                                                  

consensus_3365#0      CGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGT 120
consensus_3365#1      ------------------------------------------------------------
                                                                                  

consensus_3365#0      GCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGG 180
consensus_3365#1      -CCGCTGTACGTGT-GTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGA-- 56
                       * **** *** *  * *   ** *    ** * *  * ****     ******  **  

consensus_3365#0      GCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAA--CGGGTNTCGCAC 238
consensus_3365#1      -TAAACATCGGATTTTTCTCCAC-GGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTT 114
                         *  * *****  *  ** ** *  ** **    **  * * *   *  *  *     

consensus_3365#0      CGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCG 298
consensus_3365#1      AGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCA-CACACCTCCGAATC 173
                       * *  **** ***     * * **  *   **  *      **  * **    ***   

consensus_3365#0      TCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATT---CGGTTGTCCAAGAT 355
consensus_3365#1      TTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGAT 233
                      *      * **   * * * **  **      *    * * **   *       ******

consensus_3365#0      TATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAG 415
consensus_3365#1      CGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGT---GCAGATGTGTTTCTTCAGCAA 290
                          *         *** *    *  *  *     *    * *      * * * * ** 

consensus_3365#0      GGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGA 475
consensus_3365#1      GCCATGAGTTCAGTACATGCAAAA--ATAGAAAACAT-TTGCA--GGCTCTG----TTTG 341
                      *   *  *    *     * **        * *     *****  ** *  *     *  

consensus_3365#0      TGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGC 535
consensus_3365#1      TCCGGCGA-TGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGAC 400
                      *  * *   ** **    * ** * * *   *  * * *   * * *  * **      *

consensus_3365#0      GAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAG 595
consensus_3365#1      GATAATCT--ACGAC-TGCACATCGATTAGGATA-----CTAC-------CAAAGCTGGG 445
                      **         ** *  *     * *    ** *     * **        *  ** * *

consensus_3365#0      GTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAG 655
consensus_3365#1      CCTTCCGTCGGCGATTTGTGGTGAGT--GCAAATCGAAGG----TCGAAAACTTCCATCA 499
                          **** *  *      ***  *    * *   *** *    * *   **     *  

consensus_3365#0      ACNGAAGGCGGGNCNGGCNTANGCAA--ACGGGNGGCGGNNCGCGANGAGGGAAGNCGCG 713
consensus_3365#1      GTTC--CGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCT----ACTGCT 553
                             *** *    ** **  ***  * * *   * *  * *** *         ** 

consensus_3365#0      CNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAG 773
consensus_3365#1      GGTGGCCGCCGCACAC--ACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAG 611
                         **  ******  *    **  ***  *    ***  * **  * *  *  *  * **

consensus_3365#0      CAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAA 833
consensus_3365#1      -AACGATAACGACGACGACGACGA---CGATGAGCAAGAGGAGGAGGAGGAGGACGTGAG 667
                       ** *   * * *  *   *   *   **    *     *** ***   * *      * 

consensus_3365#0      NNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGC 893
consensus_3365#1      TATCAAGCTCGAG-----CCGGAAGTGCTGCTGGA------------------------- 697
                         *  *   * *     * **  *   * *  *                          

consensus_3365#0      NCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGA 953
consensus_3365#1      ------------------------------------------------------------
                                                                                  

consensus_3365#0      TAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNT 1013
consensus_3365#1      ------------------------------------------------------------
                                                                                  

consensus_3365#0      TTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATA 1073
consensus_3365#1      ------------------------------------------------------------
                                                                                  

consensus_3365#0      TTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGA 1133
consensus_3365#1      ------------------------------------------------------------
                                                                                  

consensus_3365#0      GGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT 1176
consensus_3365#1      -------------------------------------------
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)