These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3365#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1176 fasta sequence [CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGACGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGTGCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGGGCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGAAGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT] [+] EMBL BX469265 [CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGACGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGTGCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGGGCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAACGGGTNTCGCACCGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCGTCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATTCGGTTGTCCAAGATTATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAGGGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGATGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGCGAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAGGTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAGACNGAAGGCGGGNCNGGCNTANGCAAACGGGNGGCGGNNCGCGANGAGGGAAGNCGCGCNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAGCAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAANNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGCNCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGATAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNTTTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATATTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGAGGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT] consensusID : consensus_3365#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence [CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA] [+] EMBL BM621665 [CCGCTGTACGTGTGTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCACACACCTCCGAATCTTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGATCGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAGAACGATAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGC ] [+] EMBL BM642365 [ ccgGTCGCCGACGACGACGGAGCGCGAGGGGGGAGATAAACATCGGATTTTTCTCCACGGGGACTGTGGCCAGCAGCAACTTCCAGCGTAATTTAGAACCCGAGGCGGCATCGCAACACTAAAGCTGCCAACGAATCCACACACCTCCGAATTTTTCCCTGTGTTTCGTACGGTTTTGTCTCGCTGGGATAGATTTTCACAACCCCTCAACATCGCTCATTTTCCGACACCTACCCCCCCTCCGTCCGTGCAGATGTGTTTCTTCAGCAAGCCATGAGTTCAGTACATGCAAAAATAGAAAACATTTGCAGGCTCTGTTTGTCCGGCGATGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGACGATAATCTACGACTGCACATCGATTAGGATACTACCAAAGCTGGGCCTTCCGTCGGCGATTTGTGGTGAGTGCAAATCGAAGGTCGAAAACTTCCATCAGTTCCGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCTACTGCTGGTGGCCGCCGCACACACGCAGCCAGACGAAGCGGACGAAGATACGTACGGCGAAGAGAACGACAACGACGACGACGACGACGATGAGCAAGAGGAGGAGGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAAGTGCTGCTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3365#0 CACGAGGTGTAGCGGACGAAGATACGTACGGGCCAAGAGAACGACAACGACGACAGACGA 60 consensus_3365#1 ------------------------------------------------------------ consensus_3365#0 CGACGATAAGCAAGAGGACGAGAGAGAGGAGGACGTGAGTATCAAGCTCGAGCCGGAGGT 120 consensus_3365#1 ------------------------------------------------------------ consensus_3365#0 GCTGCTGGACGAGCAGAGGCGATATCGATCCCAAGGAGGCGGACGAAAAGGGGGACGAGG 180 consensus_3365#1 -CCGCTGTACGTGT-GTGTTAATGTGTCGCCGACGACGACGGAGCGCGAGGGGGGAGA-- 56 * **** *** * * * ** * ** * * * **** ****** ** consensus_3365#0 GCGACGAGCGGATGCTCGTCGACCGAAGAGCGACAACAAAATCGAA--CGGGTNTCGCAC 238 consensus_3365#1 -TAAACATCGGATTTTTCTCCAC-GGGGACCGTGGCCAGCAGCAACTTCCAGCGTTATTT 114 * * ***** * ** ** * ** ** ** * * * * * * consensus_3365#0 CGGAGACGAGCCGGACGGACCAGACNGAGATGGGGATGAGGCCCGGCTCAAGAGCGATCG 298 consensus_3365#1 AGAACCCGAGGCGGCATCGCAACACTAAAGCGGCCAACGAATCCA-CACACCTCCGAATC 173 * * **** *** * * ** * ** * ** * ** *** consensus_3365#0 TCGATTCGGGTCGGGCAAGCTTNGGTTCGAGCGTTGGAAAATT---CGGTTGTCCAAGAT 355 consensus_3365#1 TTTCCCTGTGTTTCGTACGGTTCTGTCTCGCTGGGATAGATTTTCACAACCCCTCAAGAT 233 * * ** * * * ** ** * * * ** * ****** consensus_3365#0 TATGCGCCGGGTAGCACCTNGTNCGNCGACCGGAATACGNCGGGCAGAGTGCGTTAACAG 415 consensus_3365#1 CGCTCATTTTCCGACACTTACCCCCCCTCCGTCCGT---GCAGATGTGTTTCTTCAGCAA 290 * *** * * * * * * * * * * * ** consensus_3365#0 GGGGTCGGCNTGGNGTGGGAAAGGTGGCGNAGAGTNCCTTGCATCGGNTTGGGAAGNTGA 475 consensus_3365#1 GCCATGAGTTCAGTACATGCAAAA--ATAGAAAACAT-TTGCA--GGCTCTG----TTTG 341 * * * * * ** * * ***** ** * * * consensus_3365#0 TGTGCCNGGTGGCATCCGGAAGGCCAATCGAGNAGTTGGGCAAGGGGTCGGGCNCGGAGC 535 consensus_3365#1 TCCGGCGA-TGACACTTTGGAGTCTATTTTTGGTGATAGTGGAAGCGATGCGCTTCAGAC 400 * * * ** ** * ** * * * * * * * * * * * ** * consensus_3365#0 GAAGNNNGGANCGGCGCGGGNGGCNANCNCGAAAAGGGGCNACGGAGGAGNACGGCAGAG 595 consensus_3365#1 GATAATCT--ACGAC-TGCACATCGATTAGGATA-----CTAC-------CAAAGCTGGG 445 ** ** * * * * ** * * ** * ** * * consensus_3365#0 GTNNCCGTGGCGGNGCCANGGTANGGCGNCGACNNGAAAGAGCGTTGGGCACGCGGGTAG 655 consensus_3365#1 CCTTCCGTCGGCGATTTGTGGTGAGT--GCAAATCGAAGG----TCGAAAACTTCCATCA 499 **** * * *** * * * *** * * * ** * consensus_3365#0 ACNGAAGGCGGGNCNGGCNTANGCAA--ACGGGNGGCGGNNCGCGANGAGGGAAGNCGCG 713 consensus_3365#1 GTTC--CGCGAGCGGTGCCTACACAACGATGAGTACCTGCGCACGACGCT----ACTGCT 553 *** * ** ** *** * * * * * * *** * ** consensus_3365#0 CNGGGGNGCCGCAGNCTGGGGCGACCANGCNNTTCGGGGGNAGNCATGCCCANGNCACAG 773 consensus_3365#1 GGTGGCCGCCGCACAC--ACGCAGCCAGACGAAGCGGATGAAGATACGTACGGGGAAGAG 611 ** ****** * ** *** * *** * ** * * * * * ** consensus_3365#0 CAANGGCCANGTCCNCNGAGGAAAAACCGNCAGGAGNATGGAAGAGCGAGNGCGNNNNAA 833 consensus_3365#1 -AACGATAACGACGACGACGACGA---CGATGAGCAAGAGGAGGAGGAGGAGGACGTGAG 667 ** * * * * * * * ** * *** *** * * * consensus_3365#0 NNNCNCGACNGTGACCCTCNGGNTGCNATACCAGNTCACCGAGNGGTCTAATCNGNTGGC 893 consensus_3365#1 TATCAAGCTCGAG-----CCGGAAGTGCTGCTGGA------------------------- 697 * * * * * ** * * * * consensus_3365#0 NCCACCTGCANTCNAGCTTNNGNAGGTGTNGAGTGGNTCTGCGGTCCCCNACTATGGAGA 953 consensus_3365#1 ------------------------------------------------------------ consensus_3365#0 TAANATCGAGGCNTTANTCGTCCAGACTTTGNACCGNTNTCTGTGGGNNGGCCGTCAGNT 1013 consensus_3365#1 ------------------------------------------------------------ consensus_3365#0 TTCAGGAGGCAACCCATTCGACTAGCGGGGATCGCGCGGGNTGTTCNTNNCCTCTACATA 1073 consensus_3365#1 ------------------------------------------------------------ consensus_3365#0 TTNTGGGTCTGGAGTTGCANGAGNGCGTNAGNTGACGGGGCAAGGGCGACGGGAGAGGGA 1133 consensus_3365#1 ------------------------------------------------------------ consensus_3365#0 GGCTGGNGCAGTCGCTGCGTAGGGACATGGCTNGNGGGNCATT 1176 consensus_3365#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||