These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTTATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGAGAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGCAGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGTTAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTCTTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGTATATACGACGGACTACTCCCCCAA] [+] EMBL AGA283465 [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTTATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGAGAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGCAGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGTTAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTCTTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGTATATACGACGGACTACTCCCCCAA] consensusID : consensus_3366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGTATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTCGCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGGCACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGGCGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTGACGCCCAGC] [+] EMBL AGA280262 [CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGTATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTCGCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGGCACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGGCGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTGACGCCCAGC] [-] EMBL BM646291 [ CTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTTGCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCGGAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGTATGCTGGTTCGGTAGTATGCAATCACTTTCCTGTGGGACTTCTCCCAGGGTGTCCGTGTCGCGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGGACGGTCACCGGCACCAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACCAGGCAGTAGTCGGGCGCGCCCGAACAGTTCATGTCGACGATTTCGACCTGCTGACCTTTGCTcgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3366#0 CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTT 60 consensus_3366#1 CTGCTCTTCCGGCGGTTTTTCCTGCTGGTTGGGCTTAACCTTCTTGTCGGAGCCCTTCTT 60 ************************************************************ consensus_3366#0 GCTGATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCG 120 consensus_3366#1 GCTAATGAGCGTCTTCTCCACCGGTGGTAGCTTATCCGATTTGCCGTGCGACAGCTTCCG 120 *** ******************************************************** consensus_3366#0 GAACTGTGTCGGGAGCCATTTTTTCCTGAAGCACACATTCCCTCCACCGGCACATATTTT 180 consensus_3366#1 GAACTGTGTCGGGAGCCATTTTTTCCCGCTGAAGCCTTTCCGTTTGTTGACGGGCGACGT 180 ************************** * * * * **** * * * * consensus_3366#0 ATCTTTGTACTGATAAAGCAGCGTCATTTTCACTGCTGCACCACCCCACATGATGGGGGA 240 consensus_3366#1 ATGCTGGT-TCGGTAGTATGCAATCACTTTC-CTGTGGGACTTCTCC-CAGGGTGTCCGT 237 ** * ** * ** *** **** *** * ** * ** ** * ** * consensus_3366#0 GAGAGGGGCCGTCGTTTTGTGTATCGATATCACTACGTCACGCGCAGCAGTAGTAGCTGC 300 consensus_3366#1 GTCG-----CGCTGTTTATTGTTCAATTTGCTGTGGGAGGAGGGCAGCGGCTTCAGG-AC 291 * ** **** *** * * * * * ***** * ** * consensus_3366#0 AGCCACAAACAAGCAAAAACGAATAAACTAGATACACTCTAACCACAACGCAATTCCGGT 360 consensus_3366#1 GGTCACCGGCAC-CAGCCCTTCCTGGCTGTCGGACGCGTTGATCGACAGACGCACC---- 346 * *** ** ** * ** * * * * * * * consensus_3366#0 TAGACACAATTCCGATTAGAAAACTGAGCAATCACTGAGTTAGTTTATTTCTTGTTGGTC 420 consensus_3366#1 -AGGCAGTAGTCGGGCGCGC---CCGAACAGTTCATGTCGACGATTTCGACCTGCTGACC 402 ** ** * ** * * * ** ** * ** * ** * ** ** * consensus_3366#0 TTTTGTTGGTCACTGGACAAGAATGGGTTGCGACACGATCTGTCGTCTGTTCGGTANGGT 480 consensus_3366#1 TTT-GCTGACGCCCAGC------------------------------------------- 418 *** * ** * * consensus_3366#0 ATATACGACGGACTACTCCCCCAA 504 consensus_3366#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||