These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [ATTTTTCACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACCCTCACACCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAATGAATTTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTGGATTCAAGCCTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATTAGGGTGGCAAGACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAATCTTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATTCATGAATCTTTGGAGATTCGTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATCTTTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTACATCCAAGTACCGAACATAATTATAATGGTACATTCCGTAAAAAAAT] [+] EMBL BX625557 [ATTTTTCACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACCCTCACACCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAATGAATTTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTGGATTCAAGCCTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATTAGGGTGGCAAGACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAATCTTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATTCATGAATCTTTGGAGATTCGTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATCTTTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTACATCCAAGTACCGAACATAATTATAATGGTACATTCCGTAAAAAAAT] consensusID : consensus_3370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence [CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTTCACTACCTGAAAAGATACATGCTCCAGCGCATATACGCACACGCGCACACTCTCACACCGATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAAAGGATTCACGAATCTGGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTAATATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTGTCTTGNCGTGGATTCAAGCTTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATAGGGTGGCAAGACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAGCACAAGCTCTATGAATCTTCGGTGATTTATGAATCCCTTGAGATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATTCATGAGTTTTTCGAGATTCATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAGATGAATATTTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT] [+] EMBL BX622614 [CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTTCACTACCTGAAAAGATACATGCTCCAGCGCATATACGCACACGCGCACACTCTCACACCGATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGAGTGATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAAAGGATTCACGAATCTGGAAAGATCAATGAATCTTCAAAAATTCATTAATCCATTAAAACTAATATCTTCAGGGATTCATGAATCTTCAGAGATGAATGATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTGTCTTGNCGTGGATTCAAGCTTCGTATGGACCGTCTCTCAAAAAATACTCAAAAGCCTGTATAGGGTGGCAAGACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAGCACAAGCTCTATGAATCTTCGGTGATTTATGAATCCCTTGAGATCCTTAGAAATTTGCGAATTTTAAGAGATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATTCATGAGTTTTTCGAGATTCATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAGATGAATATTTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTGAATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT] consensusID : consensus_3370#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [TTTTTTTTAATCTTTCGTTTGTTGGGCGTGTTTCTACGTTGCTTATTATTTACAGTGCTGCTACGTGGTAGAAACATTTTACAATTGGATAACGTACATTAATTAGGATTTGTTTTTTGAATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATGAATCTTTGAAATGATTCAATGCATCTGAAGCTGGATTGCAAAGATTCATGAATCTCGAAAGATCCACGAATCTCTAGGGATTAATTTCCTAGGAAATCTCCAAGGATTCATAGAGCTTGAGCTTTTCATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTTCTTGGTGTGTACCACGCAGCCGGTTAGT] [+] EMBL AGA280302 [TTTTTTTTAATCTTTCGTTTGTTGGGCGTGTTTCTACGTTGCTTATTATTTACAGTGCTGCTACGTGGTAGAAACATTTTACAATTGGATAACGTACATTAATTAGGATTTGTTTTTTGAATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATGAATCTTTGAAATGATTCAATGCATCTGAAGCTGGATTGCAAAGATTCATGAATCTCGAAAGATCCACGAATCTCTAGGGATTAATTTCCTAGGAAATCTCCAAGGATTCATAGAGCTTGAGCTTTTCATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTTCTTGGTGTGTACCACGCAGCCGGTTAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3370#0 ------------------------------------------------------ATTTTT 6 consensus_3370#1 CACATTCCTTCTCTCTCCCCTCTGTTGTTCGGGACAGGCATATTTGTCCTTTCCATTTTT 60 consensus_3370#2 ------------------------------------------------------------ consensus_3370#0 CACTACCTGAAAAGATACATGCTCCTCCAGCGCATATACGCACACGCCCACACCCTCACA 66 consensus_3370#1 CACTACCTGAAAAGATACATGCTCC---AGCGCATATACGCACACGCGCACACTCTCACA 117 consensus_3370#2 ------------------------------------------------------------ consensus_3370#0 CCGATTGGCGCAGAAAAAAGGAATAACAGAAAAATGATTTTTTT-ATGGAAAAATGATGA 125 consensus_3370#1 CCGATTGGCCCAGAAAAAAGGAATAACGGAAAAATGATTTTTTTTATGGAAAAATGATGA 177 consensus_3370#2 ------------------------------------------------------------ consensus_3370#0 GTGATTCGAATCTCGAATCGGTTCTTGAAAGATGTATGAATCTATAAGGGATTAATGAAT 185 consensus_3370#1 GTGATTCGAATCTCGAATCGATTCTCNAAAGATGTATGAATCTATAA------------- 224 consensus_3370#2 ------------------------------------------------------------ consensus_3370#0 TTTGAAAGATTAATGAATCTCCAAGGATTCACGAATCTCGAAAGATCAATGAATCTTCAA 245 consensus_3370#1 -----------------------AGGATTCACGAATCTGGAAAGATCAATGAATCTTCAA 261 consensus_3370#2 -----------------------------------------------------TTTTTTT 7 * ** consensus_3370#0 AAATTCATTAATCCATTAAAACTCACATCTTCAGGGATTCATGAATCTTCAGAGATGAAT 305 consensus_3370#1 AAATTCATTAATCCATTAAAACTAATATCTTCAGGGATTCATGAATCTTCAGAGATGAAT 321 consensus_3370#2 TAATCT-TTCGTTTGTTGGG-CGTGTTTCTACGTTGCTTATT--ATTTACAGTGCTGCTA 63 *** ** * ** * *** * * ** * ** * *** * ** consensus_3370#0 GATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTCTCTTGTCGTGGATTC 365 consensus_3370#1 GATTTTAAAGATATTGAATTTGCGCGATCCCACCTTGCAAACTTGTCTTGNCGTGGATTC 381 consensus_3370#2 CGTGGTAGAAACATTTTA------CAATTGGATAACGTACATTAATTAGGATTTGTTTTT 117 * ** * * *** * * ** * * * * * * * ** ** consensus_3370#0 AAGCCTCGTATGGACCGTCTCTCAAAAAAT---ACTCAAAAGCCTGTATTAGGGTGGCAA 422 consensus_3370#1 AAGCTTCGTATGGACCGTCTCTCAAAAAAT---ACTCAAAAGCCTGTAT-AGGGTGGCAA 437 consensus_3370#2 TGAATACATGTATACTAGTGTTGGGTAATTCTGATTCAGATGCTTGAATCGGAATG--AA 175 * * * ** * ** * * *** * ** ** ** * ** ** consensus_3370#0 GACTACGTAGGTTGTTACGCCCAAGAAGAAGAATACTGAAAAGCACAAGCTCTATGAATC 482 consensus_3370#1 GACTACGTANGTTGTTACGCCCAAGAAGAAGAATAATGAAAAGCACAAGCTCTATGAATC 497 consensus_3370#2 TCTTTGAAATGATTCAATGCATCTGAAG-------CTGGATTGCA-AAGATTCATGAATC 227 * * * * * ** **** ** * *** *** * ******* consensus_3370#0 TTCGGTGATTCATGAATCCCTTGAGATGCATGAATCCTTAGAAATTTGCGAATTTTAAGA 542 consensus_3370#1 TTCGGTGATTTATGAATCCCTTGAGAT--------CCTTAGAAATTTGCGAATTTTAAGA 549 consensus_3370#2 TCGAAAGATCCACGAATCTCTAGGGATTAAT--TTCCTAGGAAATCTCCAAGGATTCATA 285 * *** * ***** ** * *** *** ***** * * * ** * * consensus_3370#0 GATATATAAATCTCTTGAAATTAATGATTTTTTCGAGATT-CATGAATCTTTGGAGATTC 601 consensus_3370#1 GATATATAAATCTTTTGAAATTAATGATTTTTTCGAGATT-CATGAGTTTTTCGAGATTC 608 consensus_3370#2 GA-GCTTGAGCTTTTCATTATTCTTCTTCTTGGCGTAACAACAACAAGCTTTCGAGATTT 344 ** * * * * *** * * ** ** * ** * *** ****** consensus_3370#0 GTGAGTCTTTCCAGACTCATGAATCCCCATATAGATGAATATTTGGAGATTCGTGAATCT 661 consensus_3370#1 ATGGATCTTTGGAGATTCGTGAGTCTTTCGAGACTCATGAATCCCCACATAGATGAATAT 668 consensus_3370#2 CTTGGTGTGTACCACGCAGCCGGTTAGT-------------------------------- 372 * * * * * consensus_3370#0 TTAGAGATTCGTGAATCTTTAAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTG 721 consensus_3370#1 TTGGAGATTCGTGAATCTTTGAGATTCATGAATCTTTGCGACCGAGATTCAGATTCATTG 728 consensus_3370#2 ------------------------------------------------------------ consensus_3370#0 AATCATTTCAAAGATCATGAATCCTTATCAGATTTACCTA-CATCCAAGTACCGAACATA 780 consensus_3370#1 AATCATTTCAAGATTCATGAATCTGAATCANATTTACCTAACAT---------------- 772 consensus_3370#2 ------------------------------------------------------------ consensus_3370#0 ATTATAATGGTACATTCCGTAAAAAAAT 808 consensus_3370#1 ---------------------------- consensus_3370#2 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||