These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCAATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATAAGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCTAACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATGATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTTCCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGTTCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCAAAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAATATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTGCATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAATGCATGCGAGGACAT] [+] EMBL BM620553 [CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCAATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATAAGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCTAACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATGATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTTCCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGTTCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCAAAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAATATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTGCATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAATGCATGCGAGGACAT] consensusID : consensus_3387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 243 fasta sequence [CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAGGACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTCGAG] [+] EMBL BX610886 [CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAGGACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTA ] [+] EMBL BX618056 [ CGTTTATAATTCTACAATGCATGCGAGGACATGCATTAACGCATATATGCATGTTACAGCTTTTAATTGCATTTTTGTAAAATCTGTAATAACATACAAAATTAAAACATTGCGGAACCCCTTATAACAAGTTTTTGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3387#0 CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCA 60 consensus_3387#1 ------------------------------------------------------------ consensus_3387#0 ATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATA 120 consensus_3387#1 ------------------------------------------------------------ consensus_3387#0 AGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCT 180 consensus_3387#1 ------------------------------------------------------------ consensus_3387#0 AACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATG 240 consensus_3387#1 ------------------------------------------------------------ consensus_3387#0 ATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTT 300 consensus_3387#1 ------------CTCCCACCACAGTA-ACAATACTGAATTTTAGTACGTCCATAATCCTA 47 * ***** * ** * ** * *** * * * * ****** consensus_3387#0 CCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGT 360 consensus_3387#1 C----------AATGCATGCGAGGACATGCATTAAC---GCATA--------TACGCAGG 86 * ***** *** ** *** * ***** * *** consensus_3387#0 TCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCA 420 consensus_3387#1 TGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGC 146 * * ** *** *** ** * * ** * ** * *** *** consensus_3387#0 AAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAAT 480 consensus_3387#1 GGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAA-ATCTGAACAAGTGTAAAGGAT 205 * ** * * * ** * **** *** ** * * * * ***** ** consensus_3387#0 ATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTG 540 consensus_3387#1 CTAATTTAAA-ATCTAGAGCAAGATCGGTTAACGTCGAG--------------------- 243 **** *** ** * ** * * * consensus_3387#0 CATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAAT 600 consensus_3387#1 ------------------------------------------------------------ consensus_3387#0 GCATGCGAGGACAT 614 consensus_3387#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||