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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3387 cluster # 3387       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3387#0 length = 614 sequences # 1  
consensus_3387#1 length = 243 sequences # 2  

consensusID : consensus_3387#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 614
fasta sequence
                              [CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCAATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATAAGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCTAACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATGATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTTCCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGTTCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCAAAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAATATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTGCATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAATGCATGCGAGGACAT]

[+] EMBL BM620553             [CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCAATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATAAGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCTAACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATGATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTTCCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGTTCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCAAAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAATATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTGCATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAATGCATGCGAGGACAT]


>consensus_3387#0 CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCA ATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATA AGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCT AACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATG ATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTT CCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGT TCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCA AAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAAT ATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTG CATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAAT GCATGCGAGGACAT



consensusID : consensus_3387#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 243
fasta sequence
                              [CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAGGACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTCGAG]

[+] EMBL BX610886             [CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAGGACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTA                       ]
[+] EMBL BX618056             [                                 CGTTTATAATTCTACAATGCATGCGAGGACATGCATTAACGCATATATGCATGTTACAGCTTTTAATTGCATTTTTGTAAAATCTGTAATAACATACAAAATTAAAACATTGCGGAACCCCTTATAACAAGTTTTTGCATAACGAACTCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTCGAG]


>consensus_3387#1 CTCCCACCACAGTAACAATACTGAATTTTAGTACGTCCATAATCCTACAATGCATGCGAG GACATGCATTAACGCATATACGCAGGTGACAGCTTTTAATGGCATTTTGGTAAAATCTGT AATAACATACAAAATTAAAACATGGCGGAACCCCTAATAACAAGTGTTGGCATAACGAAC TCAAATCTGAACAAGTGTAAAGGATCTAATTTAAAATCTAGAGCAAGATCGGTTAACGTC GAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3387#0      CCGTGCACTGCTAGTAATTTCGGCCACTGTTTAAACTGAACGGAAACATTAGCAATACCA 60
consensus_3387#1      ------------------------------------------------------------
                                                                                  

consensus_3387#0      ATTTCAGCAATATCTCATAAAAAGTTGTGCATGATAGCGCGGTAAAAAAGTGCAAGTATA 120
consensus_3387#1      ------------------------------------------------------------
                                                                                  

consensus_3387#0      AGCTGCAAACGTGCACTTAAAATGAAAAGCAAATGTTAGAGGCATAGCAATATACACTCT 180
consensus_3387#1      ------------------------------------------------------------
                                                                                  

consensus_3387#0      AACGACGCAACTGGAGTGTAACTACTTTGCCAACACCAATACATAACCAAATATATGATG 240
consensus_3387#1      ------------------------------------------------------------
                                                                                  

consensus_3387#0      ATCGTACATAGCCACCCACTATAGCATACCTTGTTGATTGATCAACCATAACCAATCCTT 300
consensus_3387#1      ------------CTCCCACCACAGTA-ACAATACTGAATTTTAGTACGTCCATAATCCTA 47
                                  * ***** * ** * **  *  *** *  *    * *    ****** 

consensus_3387#0      CCGGAAATTAAAATGCTTGCCTAACAGCGCTTTACCACAGCATAGTTTTAACTGTTCAGT 360
consensus_3387#1      C----------AATGCATGCGAGGACATGCATTAAC---GCATA--------TACGCAGG 86
                      *          ***** ***        ** *** *   *****        *   *** 

consensus_3387#0      TCAGAGGAAGCGATGAAGAAAGGGTGGAAGTTCCACTAGTAGACCTACTTAGCTTATGCA 420
consensus_3387#1      TGACAGCTTTTAATGGCATTTTGGTAAAATCTGTAATAACATACAAAATTAAAACATGGC 146
                      * * **      ***       ***  **  *  * **  * **  * ***    ***  

consensus_3387#0      AAAGATCCCACTGAAAATGAAGGCTATAAGTAACGCAGCAAATATTAATGCATAAAGAAT 480
consensus_3387#1      GGAACCCCTAATAACAAGTGTTGGCATAACGAACTCAA-ATCTGAACAAGTGTAAAGGAT 205
                        *   ** * * * **     *  ****  *** **  *  *    * *  ***** **

consensus_3387#0      ATAATAGAAACGAATAAAAAAATACAAATCTTTGCTTTCATTAATTGAATGCCTGATGTG 540
consensus_3387#1      CTAATTTAAA-ATCTAGAGCAAGATCGGTTAACGTCGAG--------------------- 243
                       ****  ***    ** *  ** *    *    *                          

consensus_3387#0      CATGTTGTTCTTCCACCACAGTAACAATACTTAATTTTAGTACGTTTATAATTCTACAAT 600
consensus_3387#1      ------------------------------------------------------------
                                                                                  

consensus_3387#0      GCATGCGAGGACAT 614
consensus_3387#1      --------------
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)