cluster # 3395

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Anopheles gambiae
cluster # 3395 cluster # 3395 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3395#0 length = 331 sequences # 2

consensus_3395#1 length = 255 sequences # 1

consensusID : consensus_3395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 331
fasta sequence

                              [GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTTATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCAGGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGAGCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGTCTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAAGCTCGAGTCCGTCTTGAAGGCCTTGTACGCT]

[+] EMBL AGA280949            [GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTTATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCAGGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGAGCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGTCTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAAGCTCGAGTCCGTCTTGAAGGCCTTGTACGCT]
[+] EMBL AGA280567            [GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTTATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCAGGTACCGTAGGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGAGCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGTCTGTATGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAAGCTC                           ]




>consensus_3395#0
GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTT
ATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCA
GGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGA
GCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGT
CTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAA
GCTCGAGTCCGTCTTGAAGGCCTTGTACGCT

consensusID : consensus_3395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTTATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCAGGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGAGCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGTCTGTATGGTGGTCAC]

[+] EMBL AGA280687            [GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTTATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCAGGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGAGCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGTCTGTATGGTGGTCAC]




>consensus_3395#1
GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTT
ATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCA
GGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGA
GCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGT
CTGTATGGTGGTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3395#0      GATCGAGTTGCTCATAAACTGGCTCTGGAATTCTTCGCGTGCCTTGCCCATCGTGATCTT 60
consensus_3395#1      GATCTACTTGCTCATAGACTGGGTCTGGAATTCTTCGCGTGTCTTGCCCATCGTAATCTT 60
                      **** * ********* ***** ****************** ************ *****

consensus_3395#0      ATCGCCCGAGCGGTAGATTTGGTGTATCTTGGTCAGCATGAATATGTTGCCCGCAGCGCA 120
consensus_3395#1      ATCGCCCGAGCGGAAGTTTTGGTGTATCTTGATCAGCATGATTATGTTGCCCGCAACGCA 120
                      ************* ** ************** ********* ************* ****

consensus_3395#0      GGTACCGTATGCAAGTGCTATGCACATCAGGAACAGGCCAACGACGACGCCCCAGCCCGA 180
consensus_3395#1      GGTACCGTAGTGAAGTGCTATGCACATCAGGAACATGCCATCGACCATGCCCTAGACCGA 180
                      *********   *********************** **** **** * **** ** ****

consensus_3395#0      GCTGAACTGGCTGATGGCCATGATGACGCCGCACGTGCCCGAACCGGGGAACCCGATCGT 240
consensus_3395#1      GCTGATCTGGCTGATGGCCATGATGACGCCGCACGTGCCCGTCCCGGGGAACCCGATCGT 240
                      ***** ***********************************  *****************

consensus_3395#0      CTGTTTGGTGGTCACGAGCGCTTGGAAGGAGAAGATGAAGAAGAACATCATGAAGTTGAA 300
consensus_3395#1      CTGTATGGTGGTCAC--------------------------------------------- 255
                      **** **********                                             

consensus_3395#0      GCTCGAGTCCGTCTTGAAGGCCTTGTACGCT 331
consensus_3395#1      -------------------------------