These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGGAAATGCAAATCGCTTTCGTACAACTCCCGGAACTTCAAACCACGCGTTCGCACGCGCGCGCTCTGGTTCAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTGCTGTACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGTGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGAACTAATTCGTGTTAATATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAATACTATGTCGAAGTGTCCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAAACCAGTTCGACATGAAACACACGTGTGCTGCAAATAAAATATACTTTG] [+] EMBL BX608727 [CCGGAAATGCAAATCGCTTTCGTACAACTCCCGGAACTTCAAACCACGCGTTCGCACGCGCGCGCTCTGGTTCAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTGCTGTACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGTGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGAACTAATTCGTGTTAATATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAATACTATGTCGAAGTGTCCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAAACCAGTTCGACATGAAACACACGTGTGCTGCAAATAAAATATACTTTG] consensusID : consensus_3404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGATATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGG] [+] EMBL BM619621 [CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATATCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGATATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTGATTGAGG] consensusID : consensus_3404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 98 fasta sequence [CCGGAAATGCAAATCGCTTTCGGACAACTCCCGGAACTTCAAACCACGCGTGCGCACGCGCGCGCGCTGGTGCAAATTCCGTGCCGGATATCAATCTG] [+] EMBL BX618090 [CCGGAAATGCAAATCGCTTTCGGACAACTCCCGGAACTTCAAACCACGCGTGCGCACGCGCGCGCGCTGGTGCAAATTCCGTGCCGGATATCAATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3404#0 ------------------------------------------------------------ consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 CCGGTACAGCAAACGTGCTACAGCAAATTGATATACATTTAACAAATTCCGTTCCGTATA 60 consensus_3404#0 ------------------------------------------------------------ consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 TCAATTTGCTGTAGCACGTTTTTTGTTAAGTGTGCAGTCAAACGTGCTACAGCAAATTGA 120 consensus_3404#0 ------------------------------------------------------------ consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 TATACATTTAACAAAAAACCGCCCCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGA 180 consensus_3404#0 ------------------------------------------------------------ consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 CGAGAAAACGAGATACATTTTAAAGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGA 240 consensus_3404#0 ------------------------------------------CCGGAAATGCAAATCGCT 18 consensus_3404#2 ------------------------------------------CCGGAAATGCAAATCGCT 18 consensus_3404#1 AAGAATGAAATGAAACTACAAACTGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCAC 300 * ***** * consensus_3404#0 TTCGTACAACTCCCGGAACTTCAAACCACGC-GTTCGCACGCGCGCGCTCTGGTTCAAAT 77 consensus_3404#2 TTCGGACAACTCCCGGAACTTCAAACCACGC-GTGCGCACGCGCGCGCGCTGGTGCAAAT 77 consensus_3404#1 CTCGTTCGATCATCGAATATTATGATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAG 360 *** * * ** * ** * * ** * ** ********* ** ** consensus_3404#0 TCCGTTCC-GTATATCAATTTGCTGTAGCACGTTTGCTGTACATTTAACAAAAAACCGCC 136 consensus_3404#2 TCCGTGCC-GGATATCAATCTG-------------------------------------- 98 consensus_3404#1 TAAGTTTGAGGGTACTTGTATAGGCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTT 420 * ** * ** * * consensus_3404#0 CCTCTGTAACTCTAACCCTAACCGGTCACAGCGAGGACGAGAAAACGAGATACATTTTAA 196 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 GTGTGGCACCCATTAGTAGTGTGATTGAGG------------------------------ 450 consensus_3404#0 AGCAAGACAAAAGCGCGATTGCTCAGGGCCGAGCAGAAAGAATGAAATGAAACTACAAAC 256 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 TGCCAGAACAGCAACCACGTGGTGTGCGCAAAACCACCTCGTTCGATCATCGAATATTAT 316 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 GATCGCGTAGCATGCGCGCGCGCGCGTGTGTGTGAAGTAAGTTTGAGTGTACTTGTATAG 376 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 GCGAGCAGATCATTTTCAACTGAAATATTGTGTGTTTGTGTGGCACCCATTAGTAGTGTG 436 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 ATTGAGGGGTTTTTTTTTTGGTTAAATTTTTCAAATGGCGAGGAACTAATTCGTGTTAAT 496 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 ATTATTATTACGCCCGTTTGTTTCATAGGAAGAAGGGGGAGGAATACTATGTCGAAGTGT 556 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 CCGAAGATGGGAAGATGGATATAATTATACTCAAAACTCTAAAAACCAGTTCGACATGAA 616 consensus_3404#2 ------------------------------------------------------------ consensus_3404#1 ------------------------------------------------------------ consensus_3404#0 ACACACGTGTGCTGCAAATAAAATATACTTTG 648 consensus_3404#2 -------------------------------- consensus_3404#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||