cluster # 3432

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Anopheles gambiae
cluster # 3432 cluster # 3432 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3432#0 length = 907 sequences # 2

consensus_3432#1 length = 585 sequences # 1

consensusID : consensus_3432#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 907
fasta sequence

                              [AAAATGCTGATACAACGATTTCATTACCCTTTTCACTGCTATTATTTGCACATATTTTGCTATGGGTGTAGGTTTGATAGATGTGTCTCTGTGGTTTGTTTTCTATGTTTTTCTTTTTCTTTTCTTAAATATTTACTAAACTATCGATTAGTTTGTATTGCTGGGTTCACTTAACAGGGTGTAATGAATTAATTTTCCTTTGTTTTTCCCACCCAGAGGTATCTTATGCCCATTCTCCACATTCCATTGTTCGATGTAAGAAACCATTCTCCCTCCCTTCCCCTCATTCAAATCCTTTTTCGATAGCGTGTGTGTGTGCCATTGTGAGCGACGAAAAGGTACTTAGCTGTAACGTAGTACTTGATAGACTGCTTTTCTCACGAGTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCATAAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCAAAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGAGTGTTTTATACGTTTTAAATGTAGTGTGGTATGTAAGGAACAATTTAAACATAACATTGCGCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTTCTCGCTTGATCCGCGGTTTGCAAACGTATNNTCCAAGTATCTGCAAGTTTTTNCAAGGGTAAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATGATAAATAGAAAAAAAAGTAAGTGTCTCAATGAAATAAGTCTTTTCGATTGACGCTTTGTTCAGAGACGGTAGCGCAAAGGCGTTTCCAAACATAAAGCTTTCTTTTGTTAAATAAATATTANCTAAT]

[+] EMBL BX609086             [AAAATGCTGATACAACGATTTCATTACCCTTTTCACTGCTATTATTTGCACATATTTTGCTATGGGTGTAGGTTTGATAGATGTGTCTCTGTGGTTTGTTTTCTATGTTTTTCTTTTTCTTTTCTTAAATATTTACTAAACTATCGATTAGTTTGTATTGCTGGGTTCACTTAACAGGGTGTAATGAATTAATTTTCCTTTGTTTTTCCCACCCAGAGGTATCTTATGCCCATTCTCCACATTCCATTGTTCGATGTAAGAAACCATTCTCCCTCCCTTCCCCTCATTCAAATCCTTTTTCGATAGCGTGTGTGTGTGCCATTGTGAGCGACGAAAAGGTACTTAGCTGTAACGTAGTACTTGATAGACTGCTTTTCTCACGAGTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCATAAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCAAAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGAGTGTTTTATACGTTTTAAATGTAGTGTGGTATGTAAGGAACAATTTAAACATAACATTGCGCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTTCTCGCTT                                                                                                                                                                                                                                                ]
[-] EMBL BX619926             [                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAAGAATAGCAAAGATCGGNTTC AACGGAGTCATCGGAAGCAAAGC GCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTNATACTGTGTGGAGTG TTTATACGTTTTAAATGTAGTGTGGTATGTAAGGAACNNTTTAAACATNACATTGCGCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTTCTCGCTTGATCCGCGGTTTGCAAACGTATNNTCCAAGTATCTGCAAGTTTTTNCAAGGGTAAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATGATAAATAGAAAAAAAAGTAAGTGTCTCAATGAAATAAGTCTTTTCGATTGACGCTTTGTTCAGAGACGGTAGCGCAAAGGCGTTTCCAAACATAAAGCTTTCTTTTGTTAAATAAATATTANCTAAT]




>consensus_3432#0
AAAATGCTGATACAACGATTTCATTACCCTTTTCACTGCTATTATTTGCACATATTTTGC
TATGGGTGTAGGTTTGATAGATGTGTCTCTGTGGTTTGTTTTCTATGTTTTTCTTTTTCT
TTTCTTAAATATTTACTAAACTATCGATTAGTTTGTATTGCTGGGTTCACTTAACAGGGT
GTAATGAATTAATTTTCCTTTGTTTTTCCCACCCAGAGGTATCTTATGCCCATTCTCCAC
ATTCCATTGTTCGATGTAAGAAACCATTCTCCCTCCCTTCCCCTCATTCAAATCCTTTTT
CGATAGCGTGTGTGTGTGCCATTGTGAGCGACGAAAAGGTACTTAGCTGTAACGTAGTAC
TTGATAGACTGCTTTTCTCACGAGTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCAT
AAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCA
AAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGA
GTGTTTTATACGTTTTAAATGTAGTGTGGTATGTAAGGAACAATTTAAACATAACATTGC
GCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTT
CTCGCTTGATCCGCGGTTTGCAAACGTATNNTCCAAGTATCTGCAAGTTTTTNCAAGGGT
AAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATG
ATAAATAGAAAAAAAAGTAAGTGTCTCAATGAAATAAGTCTTTTCGATTGACGCTTTGTT
CAGAGACGGTAGCGCAAAGGCGTTTCCAAACATAAAGCTTTCTTTTGTTAAATAAATATT
ANCTAAT

consensusID : consensus_3432#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence

                              [CCGCCCACGCGTCCGGTACTACGTTACAGCTAAGTACTTGATAGACTGCTTTTCTCACGACTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCATAAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCAAAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGAGTGTTTTGTACGTTTTAAATGTAGTGTGGTATATAAGGAACAATTTAAACATAACATTGCGCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTTCTCGCTTGATCCGCGGTTTGCAAACGTATCTCCAAGTATCTGCAAGTTTTTCAAGGGTAAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATGATAAATAGAAAAAAAGTAAGTGTCTCAATGAAATATGTATTTTCGATTGACGCTTTGTAAGAGACGGTAGCCCAATGGCGTTTCCAACATAAAGCTTCTTTTGTTAAATAAATATTTCTAATTACTGGCG]

[+] EMBL BM581239             [CCGCCCACGCGTCCGGTACTACGTTACAGCTAAGTACTTGATAGACTGCTTTTCTCACGACTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCATAAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCAAAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGAGTGTTTTGTACGTTTTAAATGTAGTGTGGTATATAAGGAACAATTTAAACATAACATTGCGCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTTCTCGCTTGATCCGCGGTTTGCAAACGTATCTCCAAGTATCTGCAAGTTTTTCAAGGGTAAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATGATAAATAGAAAAAAAGTAAGTGTCTCAATGAAATATGTATTTTCGATTGACGCTTTGTAAGAGACGGTAGCCCAATGGCGTTTCCAACATAAAGCTTCTTTTGTTAAATAAATATTTCTAATTACTGGCG]




>consensus_3432#1
CCGCCCACGCGTCCGGTACTACGTTACAGCTAAGTACTTGATAGACTGCTTTTCTCACGA
CTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCATAAGTATTTAGTAGCTGGCAAAGA
TAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCAAAGCGGCAGCACACTCGTCTAGG
TAATAGTACGCGATTCATGTTAGTAATACTGTGTGGAGTGTTTTGTACGTTTTAAATGTA
GTGTGGTATATAAGGAACAATTTAAACATAACATTGCGCCGGTTTCCTAATTCAACCGTA
CATGCATTGCTGCATTGAACTCACATTTTAACAATTTCTCGCTTGATCCGCGGTTTGCAA
ACGTATCTCCAAGTATCTGCAAGTTTTTCAAGGGTAAATATAAATCATACGTTTTGCATT
AATGATACAAAATTGGTACTTATGGCAAACAAATGATAAATAGAAAAAAAGTAAGTGTCT
CAATGAAATATGTATTTTCGATTGACGCTTTGTAAGAGACGGTAGCCCAATGGCGTTTCC
AACATAAAGCTTCTTTTGTTAAATAAATATTTCTAATTACTGGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3432#0      AAAATGCTGATACAACGATTTCATTACCCTTTTCACTGCTATTATTTGCACATATTTTGC 60
consensus_3432#1      ------------------------------------------------------------
                                                                                  

consensus_3432#0      TATGGGTGTAGGTTTGATAGATGTGTCTCTGTGGTTTGTTTTCTATGTTTTTCTTTTTCT 120
consensus_3432#1      ------------------------------------------------------------
                                                                                  

consensus_3432#0      TTTCTTAAATATTTACTAAACTATCGATTAGTTTGTATTGCTGGGTTCACTTAACAGGGT 180
consensus_3432#1      ------------------------------------------------------------
                                                                                  

consensus_3432#0      GTAATGAATTAATTTTCCTTTGTTTTTCCCACCCAGAGGTATCTTATGCCCATTCTCCAC 240
consensus_3432#1      ------------------------------------------------------------
                                                                                  

consensus_3432#0      ATTCCATTGTTCGATGTAAGAAACCATTCTCCCTCCCTTCCCCTCATTCAAATCCTTTTT 300
consensus_3432#1      ------------------------------------------------------------
                                                                                  

consensus_3432#0      CGATAGCGTGTGTGTGTGCCATTGTGAGCGACGAAAAGGTACTTAGCTGTAACGTAGTAC 360
consensus_3432#1      ------------------CCGCC-CACGCGTCC----GGTACTACGTTACAGCTAAGTAC 37
                                        **       *** *     ******  * *  * *  *****

consensus_3432#0      TTGATAGACTGCTTTTCTCACGAGTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCAT 420
consensus_3432#1      TTGATAGACTGCTTTTCTCACGACTTTCGAGAATCGTGGCCTGGTGCGATAAATAGTCAT 97
                      *********************** ************************************

consensus_3432#0      AAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCA 480
consensus_3432#1      AAGTATTTAGTAGCTGGCAAAGATAGCAAAGATCAGCTTCAAACGGAGTCATCGGAAGCA 157
                      ************************************************************

consensus_3432#0      AAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGA 540
consensus_3432#1      AAGCGGCAGCACACTCGTCTAGGTAATAGTACGCGATTCATGTTAGTAATACTGTGTGGA 217
                      ************************************************************

consensus_3432#0      GTGTTTTATACGTTTTAAATGTAGTGTGGTATGTAAGGAACAATTTAAACATAACATTGC 600
consensus_3432#1      GTGTTTTGTACGTTTTAAATGTAGTGTGGTATATAAGGAACAATTTAAACATAACATTGC 277
                      ******* ************************ ***************************

consensus_3432#0      GCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTT 660
consensus_3432#1      GCCGGTTTCCTAATTCAACCGTACATGCATTGCTGCATTGAACTCACATTTTAACAATTT 337
                      ************************************************************

consensus_3432#0      CTCGCTTGATCCGCGGTTTGCAAACGTATNNTCCAAGTATCTGCAAGTTTTTNCAAGGGT 720
consensus_3432#1      CTCGCTTGATCCGCGGTTTGCAAACGTATCT-CCAAGTATCTGCAAGTTTTTC-AAGGGT 395
                      *****************************   ********************  ******

consensus_3432#0      AAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATG 780
consensus_3432#1      AAATATAAATCATACGTTTTGCATTAATGATACAAAATTGGTACTTATGGCAAACAAATG 455
                      ************************************************************

consensus_3432#0      ATAAATAGAAAAAAAAGTAAGTGTCTCAATGAAATAAGTCTTTTCGATTGACGCTTTGTT 840
consensus_3432#1      ATAAATAGAAAAAAA-GTAAGTGTCTCAATGAAATATGTATTTTCGATTGACGCTTTGTA 514
                      *************** ******************** ** ******************* 

consensus_3432#0      CAGAGACGGTAGCGCAAAGGCGTTTCCAAACATAAAGCTTTCTTTTGTTAAATAAATATT 900
consensus_3432#1      -AGAGACGGTAGCCCAATGGCGTTTCCAA-CATAAAGCTT-CTTTTGTTAAATAAATATT 571
                       ************ *** *********** ********** *******************

consensus_3432#0      ANCTAAT-------- 907
consensus_3432#1      -TCTAATTACTGGCG 585
                        *****