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Anopheles gambiae
cluster # 3437 cluster # 3437       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3437#0 length = 1035 sequences # 2  
consensus_3437#1 length = 664 sequences # 1  

consensusID : consensus_3437#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1035
fasta sequence
                              [CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACGATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGGTAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTTCGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATGTCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCGAGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCCCGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGATGCTGGCACGCCAAA]

[+] EMBL BM623530             [CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACGATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGGTAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTTCGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATGTCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCGAGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCCCGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM617724             [                                                                                                                                                                                                                                                                                                                                                                                                                   ccGCGCACGGTTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGATACCATGGCACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGATGCTGGCACGCCAAA]


>consensus_3437#0 CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACG ATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGG TAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTT CGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATG TCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCG AGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCC CGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGA AGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATG CGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCA TGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCA TTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAA ATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGA AACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGC CGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGC CTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGC AGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATC CATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGA TGCTGGCACGCCAAA



consensusID : consensus_3437#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAAGTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGCGCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTAAATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATTTATC]

[+] EMBL BM623851             [CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAAGTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGCGCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTAAATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATTTATC]


>consensus_3437#1 CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGC AGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCC GGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGA TGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGC GGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAA GTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGC GCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTA AATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGA ATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAG ACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTAC TACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATT TATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3437#0      CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACG 60
consensus_3437#1      ------------------------------------------------------------
                                                                                  

consensus_3437#0      ATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGG 120
consensus_3437#1      ------------------------------------------------------------
                                                                                  

consensus_3437#0      TAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTT 180
consensus_3437#1      ------------------------------------------------------------
                                                                                  

consensus_3437#0      CGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATG 240
consensus_3437#1      --CCGCCGTTTCGG-GGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTT- 56
                        ****       * **   * ** *     *    *    *   ** * * * * * * 

consensus_3437#0      TCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCG 300
consensus_3437#1      -CCGCAGAAACCGTGGCTAC-AGAACGCCACCATCCGGG-AGAACGTCCTGTTCGGCGAG 113
                       * *  * **  *  **  * ** ** *  ****  *    ** **  *  ** ** * *

consensus_3437#0      AGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCC 360
consensus_3437#1      AGCTT-CCGGCCGAA-ACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACC 171
                      ***     * ***   ** *   * ****  **  * ****      * **** *** **

consensus_3437#0      -CGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAG 419
consensus_3437#1      TCGACCTGATGCCTGCCGGCGATGGGACGGAA------ATTGGCGAACGTG-GCCTGAAA 224
                       *** *    ** **  *  ** *   *  *        * ** ** **   * *** * 

consensus_3437#0      AAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCAT 479
consensus_3437#1      CTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAAC 284
                        **   **    *** * *** * * **    *    *  * **     * * * * * 

consensus_3437#0      GCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACC 539
consensus_3437#1      GTCGTAATATTGGT-AAGTGCGTATGTGCGTTGTGGG-CGGTGGAGGGGTTTTTCGTGTT 342
                      *  *   * **  * ***  ** * *      ****  **     ****           

consensus_3437#0      ATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTC 599
consensus_3437#1      TTGTTTTATT-TATTCGGCGCTTTGAT---TTGATTGTGCTCGGGAGAAAGTTAATTGG- 397
                       **    * * *   *  * * ****     ***  ****        **  * *  *  

consensus_3437#0      ATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATA 659
consensus_3437#1      --TTTTAGATTTTTTTTTAATTTTAAAT-GTCTTTTTCAAATGTGTT-TTGTTTGAACAA 453
                        * ** *   *      *     **** ***  *      ** * *  *    **   *

consensus_3437#0      AATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCG--ATTGCGTACGTTCCGC 717
consensus_3437#1      TATAGTTGTATCGGTTA-TGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTAT 512
                       **  *  *  ***  *     * * **** **** *  ***    *  ***  **    

consensus_3437#0      AGAAACCGTGGCTACAGAACGCCACCATCCGGGAGA-ACGTCCTGTTCGGCGAGAGCTTC 776
consensus_3437#1      ACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTC 572
                      * *  *  *  **  *  *     ***  *   *** * **    *  *   * ** ***

consensus_3437#0      CGGCCGAAACGGTACGACCGGGTGCTGCGG-GCCTGTGCACTGAAGCCGGACCTCGACCT 835
consensus_3437#1      CATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCA--TTTGTTTA 630
                      *            *  *    ** ** *     *  * ** *  *        * *    

consensus_3437#0      GATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCA 895
consensus_3437#1      GATAAGTTTAAACTATTTTGTTCAT-TTATTTATC------------------------- 664
                      ***   *     * **       *  **    * *                         

consensus_3437#0      GCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGA 955
consensus_3437#1      ------------------------------------------------------------
                                                                                  

consensus_3437#0      TGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCA 1015
consensus_3437#1      ------------------------------------------------------------
                                                                                  

consensus_3437#0      CCGGATGCTGGCACGCCAAA 1035
consensus_3437#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)