These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence [CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACGATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGGTAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTTCGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATGTCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCGAGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCCCGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGATGCTGGCACGCCAAA] [+] EMBL BM623530 [CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACGATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGGTAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTTCGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATGTCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCGAGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCCCGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACCATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCA ] [+] EMBL BM617724 [ ccGCGCACGGTTGGAGAAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCATGCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGATACCATGGCACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTCATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATAAATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGATGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCACCGGATGCTGGCACGCCAAA] consensusID : consensus_3437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAAGTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGCGCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTAAATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATTTATC] [+] EMBL BM623851 [CCGCCGTTTCGGGGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTTCCGCAGAAACCGTGGCTACAGAACGCCACCATCCGGGAGAACGTCCTGTTCGGCGAGAGCTTCCGGCCGAAACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACCTCGACCTGATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGTAAGTGCGTATGTGCGTTGTGGGCGGTGGAGGGGTTTTTCGTGTTTTGTTTTATTTATTCGGCGCTTTGATTTGATTGTGCTCGGGAGAAAGTTAATTGGTTTTAGATTTTTTTTTAATTTTAAATGTCTTTTTCAAATGTGTTTTGTTTGAACAATATAGTTGTATCGGTTATGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTATACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTCCATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCATTTGTTTAGATAAGTTTAAACTATTTTGTTCATTTATTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3437#0 CCGGCAAAAGTGACGCGTCGCTGGACATGGACGAAGCGGGTGACCCACAGGACGGGGACG 60 consensus_3437#1 ------------------------------------------------------------ consensus_3437#0 ATGCTGCAGCAGCGCAGGAACAGTGCCCGGGTGTTCCGGTCGTTGCACCACCCGATCAGG 120 consensus_3437#1 ------------------------------------------------------------ consensus_3437#0 TAGAAGAAGGGCAGCAGCTGCAGCAGCCAGGCATTAAATCGTCCGATAATGTTACCGGTT 180 consensus_3437#1 ------------------------------------------------------------ consensus_3437#0 CGCCGCAAACCGAGCGGAAAGCTGCTGACAATGCTGGCCCATTGCCGCTGGTGGAGGATG 240 consensus_3437#1 --CCGCCGTTTCGG-GGTGGGTTGTTTTTTGTTTCAGATACTCATCGATTGCGTACGTT- 56 **** * ** * ** * * * * ** * * * * * * consensus_3437#0 TCGGTGGGAAAAGCTGCAGCCAGCACTCGTCCATGAGCTCGGACCGGTCGATTAGGTGCG 300 consensus_3437#1 -CCGCAGAAACCGTGGCTAC-AGAACGCCACCATCCGGG-AGAACGTCCTGTTCGGCGAG 113 * * * ** * ** * ** ** * **** * ** ** * ** ** * * consensus_3437#0 AGCAGGTTGACCGGGCACCGATGGCCCGGCAGCGACCGGCCAAATACCAGAAGACGGTCC 360 consensus_3437#1 AGCTT-CCGGCCGAA-ACGGTACGACCGGGTGCTGCGGGCCTGTGCACTGAAGCCGGACC 171 *** * *** ** * * **** ** * **** * **** *** ** consensus_3437#0 -CGAGCCCCCGCGTGAAGCTGAAGAAGCACAGCCAGCTGTCGGTGAGCGCACGGCTGGAG 419 consensus_3437#1 TCGACCTGATGCCTGCCGGCGATGGGACGGAA------ATTGGCGAACGTG-GCCTGAAA 224 *** * ** ** * ** * * * * ** ** ** * *** * consensus_3437#0 AAGTGTCGCCAGAAGCAGAAGCATCTGGCGCGGGAAATGCGCTTCGGGCTGCCCGACCAT 479 consensus_3437#1 CTGTCCGGCGGTCAGCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAAC 284 ** ** *** * *** * * ** * * * ** * * * * * consensus_3437#0 GCGGCGGTGTTTCTTAAGGACGCACGCTTCCGGTGGAACGACACGGGGGCAGACGACACC 539 consensus_3437#1 GTCGTAATATTGGT-AAGTGCGTATGTGCGTTGTGGG-CGGTGGAGGGGTTTTTCGTGTT 342 * * * ** * *** ** * * **** ** **** consensus_3437#0 ATGACACACTGTGCGCTACACATTGAGCAGCTGACCGTGCCGAAAGCCAAACTGACCGTC 599 consensus_3437#1 TTGTTTTATT-TATTCGGCGCTTTGAT---TTGATTGTGCTCGGGAGAAAGTTAATTGG- 397 ** * * * * * * **** *** **** ** * * * consensus_3437#0 ATTGTTGGGCGTAGCGGGAGCGGCAAATCGTCCCTGCTGGCTGCGCTGCTCAAAGAGATA 659 consensus_3437#1 --TTTTAGATTTTTTTTTAATTTTAAAT-GTCTTTTTCAAATGTGTT-TTGTTTGAACAA 453 * ** * * * **** *** * ** * * * ** * consensus_3437#0 AATCATCTTTCCGGCGAACTGATCTGGAATAAATACTCATCG--ATTGCGTACGTTCCGC 717 consensus_3437#1 TATAGTTGTATCGGTTA-TGATTTTTGAATCAATATTTTTCGTGGCTATGTATATTTTAT 512 ** * * *** * * * **** **** * *** * *** ** consensus_3437#0 AGAAACCGTGGCTACAGAACGCCACCATCCGGGAGA-ACGTCCTGTTCGGCGAGAGCTTC 776 consensus_3437#1 ACATTCTATTTCTCTACTATAATTCCAGACAATAGAGAAGTGTCTTCTGTTCAAAGTTTC 572 * * * * ** * * *** * *** * ** * * * ** *** consensus_3437#0 CGGCCGAAACGGTACGACCGGGTGCTGCGG-GCCTGTGCACTGAAGCCGGACCTCGACCT 835 consensus_3437#1 CATTTTTTTAAACAACAAATAGTACTACTACATCAATACATTTTATTTCA--TTTGTTTA 630 * * * ** ** * * * ** * * * * consensus_3437#0 GATGCCTGCCGGCGATGGGACGGAAATTGGCGAACGTGGCCTGAAACTGTCCGGCGGTCA 895 consensus_3437#1 GATAAGTTTAAACTATTTTGTTCAT-TTATTTATC------------------------- 664 *** * * ** * ** * * consensus_3437#0 GCGGCAGCGTATCGCCATCGCCCGGGCCCTCTACTCGTCGGCCAACGTCGTAATATTGGA 955 consensus_3437#1 ------------------------------------------------------------ consensus_3437#0 TGATCCATTGTCCGCCCTAGACAACGAGGTCGCCATGGACGTTTTCGAGAACGGTGTCCA 1015 consensus_3437#1 ------------------------------------------------------------ consensus_3437#0 CCGGATGCTGGCACGCCAAA 1035 consensus_3437#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||