cluster # 3443

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Anopheles gambiae
cluster # 3443 cluster # 3443 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3443#0 length = 772 sequences # 2

consensus_3443#1 length = 304 sequences # 1

consensusID : consensus_3443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence

                              [CCGCCCACGCGTCCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGTGAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCTAAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGGACGCAATTCCCGGGAACGTGTGC-CCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGACGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAACAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGATCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGCGGATAGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACCTCAACGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC]

[+] EMBL BM614202             [CCGCCCACGCGTCCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGTGAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCTAAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGGACGCAATTCCCGGGAACGTGTGC CCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGACGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAACAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGATCTGCCGACCGGTCTG                                                                                                                                                            ]
[+] EMBL BM575351             [                                                                                                                                                   ccggcatgtATGGCAGTAGTAGGAAAGCGTGAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCTAAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGGACGCAATTCCCGGGAACGTGTGCACCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGACGGGCTGCAGGAAATCGAGCGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAACAAGCGGATAGCGACGAACGTGTCTGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGATCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGCGGATAGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACCTCAACGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC]




>consensus_3443#0
CCGCCCACGCGTCCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGT
GTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTG
CAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGTGAA
TGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGTGCT
AAATAGTGTGTTGTGCAAATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTGACGG
ACGCAATTCCCGGGAACGTGTGCCCTGAATGAATAGAAACATGAAGCGGCAGCTGGAAAA
GTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATGCGGA
CGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACCTGAA
CAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGGAGAA
GCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCAAGGA
TCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGCGGAT
AGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACCTCAA
CGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC

consensusID : consensus_3443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGTTGCCTGTACCGTTTGCACATTTTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGTGCGGGCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTTTCTGTGTGCTGGCCCGCAGAGTAGC]

[+] EMBL AGA281185            [TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCGCGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATACTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGTTGCCTGTACCGTTTGCACATTTTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGTGCGGGCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTTTCTGTGTGCTGGCCCGCAGAGTAGC]




>consensus_3443#1
TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCG
CGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATA
CTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGTTG
CCTGTACCGTTTGCACATTTTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGTGCG
GGCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTTTCTGTGTGCTGGCCCGCAGAG
TAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3443#0      --CCGCCCACGCGT-CCGGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCG 57
consensus_3443#1      TTCTTCTCTTGTTTTCCTGTTCGTTGTTGCGTACGGTTGTGTGTAGGGTGAGTGTTTTCG 60
                        *  * *  *  * ** ******************************************

consensus_3443#0      CGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATA 117
consensus_3443#1      CGTGTGCCGTGAAGCGAAAAGCCTAATCGTTGTACCTCTGTAAGCGTGTGTGTGAATATA 120
                      ************************************************************

consensus_3443#0      CTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGCAGTAGTAGGAAAGCGT 177
consensus_3443#1      CTGCAGCCACTTGCGCTCAACTGTAAAATGTTATTCTAAATGGTAATTGTCCGCGCGT-T 179
                      ******************************************* * * **  *   *  *

consensus_3443#0      GAATGCTAGGACGAAGCAATAGCGTTAATTAATAAGGTCGGATTGTTTTTTTAAACCAGT 237
consensus_3443#1      GCCTGTACCGTTTGCACATT--TTTTCGGTGGTGGAATTTGCCCAGCGTGTATGGGTTGT 237
                      *  **    *      ** *    **   *  *    *  *       * *       **

consensus_3443#0      GCTAAATAGTGTGTTGTGCA-AATAATAAGCGGGCAGAAGCAGATTAAATGCATCTAGTG 296
consensus_3443#1      GCGG----GCGAGTTGTGCGCAATCCGGGGTAGAGGGGAGCCGTTT---TCTGTGTGCTG 290
                      **      * * *******  ***     *  *   * *** * **   *   * *  **

consensus_3443#0      ACGGACGCAATTCCCGGGAACGTGTGCCCTGAATGAATAGAAACATGAAGCGGCAGCTGG 356
consensus_3443#1      GCCCGCAGAGTAGC---------------------------------------------- 304
                       *   *  * *  *                                              

consensus_3443#0      AAAAGTTCAAAGAGGAACTCAAATCGAACCTATCCCGGTCCAGCAAGGCGGAGAAGAATG 416
consensus_3443#1      ------------------------------------------------------------
                                                                                  

consensus_3443#0      CGGACGGGCTGCAGGAAATCGAACGTGAGGTCGACCGGTACAAAGACATACTGCAGAACC 476
consensus_3443#1      ------------------------------------------------------------
                                                                                  

consensus_3443#0      TGAACAAGCGGATAGCGACGAACGTGTCCGCCGGCCAGCCACAGGATGCGGTCGCGCGGG 536
consensus_3443#1      ------------------------------------------------------------
                                                                                  

consensus_3443#0      AGAAGCGCTGCAAGAAGGTGCCCGAGTTCCAGCTCGGCCAGCTGATGGAGGAATCGGTCA 596
consensus_3443#1      ------------------------------------------------------------
                                                                                  

consensus_3443#0      AGGATCTGCCGACCGGTCTGCTGAAGGATGTGCTGGACACGTGCGCACGCGTCGAGAAGC 656
consensus_3443#1      ------------------------------------------------------------
                                                                                  

consensus_3443#0      GGATAGCGACGGAGATAGTGAACAACGAGGTGAACGTGGAGAACTCTGTCAGCAAAAACC 716
consensus_3443#1      ------------------------------------------------------------
                                                                                  

consensus_3443#0      TCAACGACATCATCGAGCGCCACTTGTCCACGATCCAGAAGCAGAAGCGCGTCGTC 772
consensus_3443#1      --------------------------------------------------------