|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence
[CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAACCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT]
[+] EMBL BM621916 [CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAACCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAA ]
[+] EMBL BM642357 [ ccgAGCGCAACAAGTAGTATGTGGAACCGTGGTCGAATTGTGAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCGGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCGGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGCGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGCGGCGGTTCCGCGATCGATACCTGCAAGGTGGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGCCCCGATTGGA AGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCTGG AACCGGTTCGGAAACGACCGGTGTAGCGATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT]
consensusID : consensus_3456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA]
[+] EMBL BM616818 [CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3456#0 CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAA 60
consensus_3456#1 ------------------------------------------------------------
consensus_3456#0 CCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGC 120
consensus_3456#1 ------------------------------------------------------------
consensus_3456#0 ACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGC 180
consensus_3456#1 ------------------------------------------------------------
consensus_3456#0 GTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCA 240
consensus_3456#1 ------------------------------------------------------------
consensus_3456#0 TGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACA 300
consensus_3456#1 ----------------------------------CCGGTCACGAGTTCATATTTCCTT-- 24
*** * ** * **
consensus_3456#0 GCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT 360
consensus_3456#1 GCTCCCCCCCTCCTACATGATTCAC-ATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT 83
*** *** * * ** * * **********************************
consensus_3456#0 GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC 420
consensus_3456#1 GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC 143
************************************************************
consensus_3456#0 CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG 480
consensus_3456#1 CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG 203
************************************************************
consensus_3456#0 CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT 540
consensus_3456#1 CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT 263
************************************************************
consensus_3456#0 CCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA 600
consensus_3456#1 CCCGATCGGACGGG-CGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA 322
************** *********************************************
consensus_3456#0 CGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG 660
consensus_3456#1 CGACGGCCGGAA-CCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG 381
************ ***********************************************
consensus_3456#0 CACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT--- 713
consensus_3456#1 CACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA 437
******************** ******************** ***********
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||