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Anopheles gambiae
cluster # 3456 cluster # 3456       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3456#0 length = 713 sequences # 2  
consensus_3456#1 length = 437 sequences # 1  

consensusID : consensus_3456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 713
fasta sequence
                              [CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAACCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT]

[+] EMBL BM621916             [CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAACCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAA                                                           ]
[+] EMBL BM642357             [                                  ccgAGCGCAACAAGTAGTATGTGGAACCGTGGTCGAATTGTGAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCGGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCGGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGCGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGCGGCGGTTCCGCGATCGATACCTGCAAGGTGGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGCCCCGATTGGA AGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCTGG AACCGGTTCGGAAACGACCGGTGTAGCGATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT]


>consensus_3456#0 CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAA CCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGC ACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGC GTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCA TGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACA GCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT CCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA CGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG CACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT



consensusID : consensus_3456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence
                              [CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA]

[+] EMBL BM616818             [CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA]


>consensus_3456#1 CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTC CGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGC CTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGT GGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCG GAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTG AAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCA ATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCC ATCCTCGGGCTGGTCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3456#0      CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAA 60
consensus_3456#1      ------------------------------------------------------------
                                                                                  

consensus_3456#0      CCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGC 120
consensus_3456#1      ------------------------------------------------------------
                                                                                  

consensus_3456#0      ACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGC 180
consensus_3456#1      ------------------------------------------------------------
                                                                                  

consensus_3456#0      GTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCA 240
consensus_3456#1      ------------------------------------------------------------
                                                                                  

consensus_3456#0      TGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACA 300
consensus_3456#1      ----------------------------------CCGGTCACGAGTTCATATTTCCTT-- 24
                                                          *** *         ** * **   

consensus_3456#0      GCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT 360
consensus_3456#1      GCTCCCCCCCTCCTACATGATTCAC-ATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT 83
                      *** *** *     *  **   * * **********************************

consensus_3456#0      GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC 420
consensus_3456#1      GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC 143
                      ************************************************************

consensus_3456#0      CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG 480
consensus_3456#1      CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG 203
                      ************************************************************

consensus_3456#0      CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT 540
consensus_3456#1      CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT 263
                      ************************************************************

consensus_3456#0      CCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA 600
consensus_3456#1      CCCGATCGGACGGG-CGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA 322
                      ************** *********************************************

consensus_3456#0      CGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG 660
consensus_3456#1      CGACGGCCGGAA-CCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG 381
                      ************ ***********************************************

consensus_3456#0      CACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT--- 713
consensus_3456#1      CACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA 437
                      ******************** ******************** ***********   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)