These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence [CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAACCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT] [+] EMBL BM621916 [CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAACCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAA ] [+] EMBL BM642357 [ ccgAGCGCAACAAGTAGTATGTGGAACCGTGGTCGAATTGTGAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGCACATTCGCGACCGGTCGCAATCGGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGCGTTCGAGATGTCATCCTCAACGATACGGTACGGGCCGGGAGTGACCCGCGAGCTGGGCCATGATTTGCAAAACCTGGGCGCAAAGCGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACAGCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGCGGCGGTTCCGCGATCGATACCTGCAAGGTGGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGCCCCGATTGGA AGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCTGG AACCGGTTCGGAAACGACCGGTGTAGCGATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT] consensusID : consensus_3456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA] [+] EMBL BM616818 [CCGGTCACGAGTTCATATTTCCTTGCTCCCCCCCTCCTACATGATTCACATGCGATCGTCCGTGCCGGCATCGAGCCGGTACTGTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGCCCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTGCAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGTCCCGATCGGACGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAACGACGGCCGGAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTGCACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3456#0 CCGGCGAAGCACGGATCCATTTTAATCTTGATTTGATAGCGCAACAAGTAGTATGTGGAA 60 consensus_3456#1 ------------------------------------------------------------ consensus_3456#0 CCGAGGTCGAATTGTCAGCCTAATGCGAACCGTGTCCAGTGGCAGCTGCAGCTGCCCAGC 120 consensus_3456#1 ------------------------------------------------------------ consensus_3456#0 ACATTCGCGACCGGTCGCAATCAGTCAGCAGACCTCATGTTCCGCGGAAAAAGATACCGC 180 consensus_3456#1 ------------------------------------------------------------ consensus_3456#0 GTTCGAGATGTCATCCTCAACGATACGGTACGGGCCAGGAGTGACCCGCGAGCTGGGCCA 240 consensus_3456#1 ------------------------------------------------------------ consensus_3456#0 TGATTTGCAAAACCTGGGCGCAAAGAGCGTCTGCGTGGTGAGCGACCGGAATGTGCTACA 300 consensus_3456#1 ----------------------------------CCGGTCACGAGTTCATATTTCCTT-- 24 *** * ** * ** consensus_3456#0 GCTGCCCTCGGTAAAGGTGGGACTCGATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT 360 consensus_3456#1 GCTCCCCCCCTCCTACATGATTCAC-ATGCGATCGTCCGTGCCGGCATCGAGCCGGTACT 83 *** *** * * ** * * ********************************** consensus_3456#0 GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC 420 consensus_3456#1 GTTCGACGCGGTGCGGGTCGAGCCGACGAACGAAAGCCTGCAGACGGCGATCGACTTTGC 143 ************************************************************ consensus_3456#0 CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG 480 consensus_3456#1 CCGGTCACACCGGTTCGATGCGTTCGTAGCGATCGGTGGCGGTTCCGCGATCGATACCTG 203 ************************************************************ consensus_3456#0 CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT 540 consensus_3456#1 CAAGGTAGCGAACCTGTACAGTGCCGACCGGGAGGCGGAATTCCTCGACTACGTAAACGT 263 ************************************************************ consensus_3456#0 CCCGATCGGACGGGGCGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA 600 consensus_3456#1 CCCGATCGGACGGG-CGAAGGAGGTAACGGTCCCGCTGAAGCCGCTGATTGCCGTTCCAA 322 ************** ********************************************* consensus_3456#0 CGACGGCCGGAAACCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG 660 consensus_3456#1 CGACGGCCGGAA-CCGGTTCGGAAACGACCGGTGTAGCAATCTTCGACCACAAACCGCTG 381 ************ *********************************************** consensus_3456#0 CACGCCAAGACGGGTATTTCGAGCAAAGCATTGCGGCCCATTCTCGGGCTGGT--- 713 consensus_3456#1 CACGCCAAGACGGGTATTTCCAGCAAAGCATTGCGGCCCATCCTCGGGCTGGTCGA 437 ******************** ******************** *********** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||