cluster # 3461

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Anopheles gambiae
cluster # 3461 cluster # 3461 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3461#0 length = 368 sequences # 2

consensus_3461#1 length = 282 sequences # 1

consensusID : consensus_3461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence

                              [AGGCCAAGAATCCNGCACGATGGGAAATCCACTGTCCTAGATGTCAGATTATATGCATTATTATTAAAACAAGAAAAACACACACACACTGTGTCCCCCTATTCTCGTTGTTTGTGTAGATCAAGCAGCTTATCGGCTAAAATCACTTACACTCGGCAGGGGTTTGAGAAAAAGGAAATTATGTGAATGTGGAAATGTATGTCTCTTCCAATAACAACACCCTTTCAGTAAACCC----TATGTGTATGTGTATGCATGTGGATGGTACACGTGAACAAGAATGTGACAACTGACCGTTGAGGCTCAGATTGGTTCAAGAAAAGGATCTTTTAGTAAACCAATTGGTTAGATAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BX467209             [AGGCCAAGAATCCNGCACGATGGGAAATCCACTGTCCTAGATGTCAGATTATATGCATTATTATTAAAACAAGAAAAACACACACACACTGTGTCCCCCTATTCTCGTTGTTTGTGTAGATCAAGCAGCTTATCGGCTAAAATCACTTACACTCGGCAGGGGTTTGAGAAAAAGGAAATTATGTGAATGTGGAAATGTATGTCTCTTCCAATAACAACACCCTTTCAGTAAACCC    TATGTGTATGTGTATGCATGTGGATGGTACACGTGAACAAGAATGTGACAACTGACCGTTGAGGCTCAGATTGGTTCAAGAAAAGGATCTTTTAGTAAACCAATTGGTTAGATAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM585741             [                                                                       AGAAGAA A AAACACACTGTGTCCCCCTATTCTCGTTGTTTGTGTAGATCAAGCAGCTTGTCGGCTAAAATCACTTACACTCGGCAGGGGTTTGAGAAAAAGGAAATTATGTGAATGTGGAAATGAATGTCTCTTCCAATAAGAACACCCTTTCAGTAAACCCTATGTATGTGTGTGTGTATGCATGTGTA CGTACACGTGAACAAGAATGTGACAACTGACCGTTGAGGCTCAGATTGGTTCAAGAAAAGGAACTTTTAGTAAACCAATT GTTAGAT                    ]




>consensus_3461#0
AGGCCAAGAATCCNGCACGATGGGAAATCCACTGTCCTAGATGTCAGATTATATGCATTA
TTATTAAAACAAGAAAAACACACACACACTGTGTCCCCCTATTCTCGTTGTTTGTGTAGA
TCAAGCAGCTTATCGGCTAAAATCACTTACACTCGGCAGGGGTTTGAGAAAAAGGAAATT
ATGTGAATGTGGAAATGTATGTCTCTTCCAATAACAACACCCTTTCAGTAAACCCTATGT
GTATGTGTATGCATGTGGATGGTACACGTGAACAAGAATGTGACAACTGACCGTTGAGGC
TCAGATTGGTTCAAGAAAAGGATCTTTTAGTAAACCAATTGGTTAGATAAAAAAAAAAAA
AAAAAAAA

consensusID : consensus_3461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [AAAAAAAAAANTGTGTCCCCCTATTCTCGTTGTTTGTGTAGATCAAGCAGCTTTTCGGCTAAAATAACTAAAACTCSGCAGGGGTTTGAGAAAAAGGAAATTATGTGAATGTGGAAATNAATSTCTCTTCCAATAAAAAAACCCTTTCAGTAAACCCTATGTATGTGTGTGTGTATGCATGTGTANGTAAACGTGAACAAGAATGTAACAACGAACGATGAGGTTCAGATTGCTTCAAGAAAAGGAACTTTTAGTAAACCAATTGTTAGATAAAAAAAAAAA]

[-] EMBL AGA281521            [AAAAAAAAAANTGTGTCCCCCTATTCTCGTTGTTTGTGTAGATCAAGCAGCTTTTCGGCTAAAATAACTAAAACTCSGCAGGGGTTTGAGAAAAAGGAAATTATGTGAATGTGGAAATNAATSTCTCTTCCAATAAAAAAACCCTTTCAGTAAACCCTATGTATGTGTGTGTGTATGCATGTGTANGTAAACGTGAACAAGAATGTAACAACGAACGATGAGGTTCAGATTGCTTCAAGAAAAGGAACTTTTAGTAAACCAATTGTTAGATAAAAAAAAAAA]




>consensus_3461#1
AAAAAAAAAANTGTGTCCCCCTATTCTCGTTGTTTGTGTAGATCAAGCAGCTTTTCGGCT
AAAATAACTAAAACTCSGCAGGGGTTTGAGAAAAAGGAAATTATGTGAATGTGGAAATNA
ATSTCTCTTCCAATAAAAAAACCCTTTCAGTAAACCCTATGTATGTGTGTGTGTATGCAT
GTGTANGTAAACGTGAACAAGAATGTAACAACGAACGATGAGGTTCAGATTGCTTCAAGA
AAAGGAACTTTTAGTAAACCAATTGTTAGATAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3461#0      AGGCCAAGAATCCNGCACGATGGGAAATCCACTGTCCTAGATGTCAGATTATATGCATTA 60
consensus_3461#1      ------------------------------------------------------------
                                                                                  

consensus_3461#0      TTATTAAAACAAGAAAAACACACACACACTGTGTCCCCCTATTCTCGTTGTTTGTGTAGA 120
consensus_3461#1      ------------------AAAAAAAAAANTGTGTCCCCCTATTCTCGTTGTTTGTGTAGA 42
                                         * * * * * *******************************

consensus_3461#0      TCAAGCAGCTTATCGGCTAAAATCACTTACACTCGGCAGGGGTTTGAGAAAAAGGAAATT 180
consensus_3461#1      TCAAGCAGCTTTTCGGCTAAAATAACTAAAACTCSGCAGGGGTTTGAGAAAAAGGAAATT 102
                      *********** *********** *** * **** *************************

consensus_3461#0      ATGTGAATGTGGAAATGTATGTCTCTTCCAATAACAACACCCTTTCAGTAAACCCTATGT 240
consensus_3461#1      ATGTGAATGTGGAAATNAATSTCTCTTCCAATAAAAAAACCCTTTCAGTAAACCCTATGT 162
                      ****************  ** ************* ** **********************

consensus_3461#0      GTATGTGTATGCATGTGGATG---GTACACGTGAACAAGAATGTGACAACTGACCGTTGA 297
consensus_3461#1      ATGTGTGTGTGTATGCATGTGTANGTAAACGTGAACAAGAATGTAACAAC-GAACGATGA 221
                       * ***** ** ***    **   *** **************** ***** ** ** ***

consensus_3461#0      GGCTCAGATTGGTTCAAGAAAAGGATCTTTTAGTAAACCAATTGGTTAGATAAAAAAAAA 357
consensus_3461#1      GGTTCAGATTGCTTCAAGAAAAGGAACTTTTAGTAAACCAATTG-TTAGATAAAAAAAAA 280
                      ** ******** ************* ****************** ***************

consensus_3461#0      AAAAAAAAAAA 368
consensus_3461#1      AA--------- 282
                      **