These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 906 fasta sequence [AGAATCGGCACAGGGTTGTNTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTACTTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAAACAGGAAAATTGACTTTTAAATCAACCATCCGGTTGCGAACAACCTCAATTCACCTCATTATCCACGCTGCTCCTCGT-AACTCCTTCGTAACTTNCAGTTACAAATGAATCGGTGAACCCTGACAAAACG-GTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAGAAAGGAATATAGACCTTAAGACGAGATGAACAAATCACGCGGAAATGGACAGGAAT] [+] EMBL BX466440 [AGAATCGGCACAGGGTTGTNTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTACTTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAAACAGGAAAATTGACTTTTAAATCAACCATCCGGTTGCGAACAACCTCAATTCACCTCATTATCCACGCTGCTCCTCGT AACTCCTTCGTAACTTNCAGTTACAAATGAATCGGTGAACCCTGACAAAACG G ] [+] EMBL BX611840 [ GCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTA TTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAGACAGG AAATTGACTTTTAAATCAA CATCCGGTT CGAACAA CTCAATTCA CTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGT ACTT GAGTTA AAATG ATC GTGAA CCTGAC AAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAGAAAGGAATATAGACCTTAAGACGAGATGAACAAATCACGCGGAAATGGACAGGAAT] consensusID : consensus_3465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTATTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAGACAGGAAATTGACTTTTAAATCAACATCCGGTTCGAACAACTCAATTCACTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTACTTGAGTTAAAATGATCGTGAACCTGACAAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL AGA281554 [TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTCTAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACTGTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCAGCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAATGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAACAAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGACCTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGTAAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAAGACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTATTGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAATAAACTGGGAAGCGATTATGATTTACGTATTATGGGAGAATCAATCCGCTTTACTTTTCTTCTTATTCGTTACATCGTCCAGCAGACAGGAAATTGACTTTTAAATCAACATCCGGTTCGAACAACTCAATTCACTCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTACTTGAGTTAAAATGATCGTGAACCTGACAAACGTTTTAGTTTAAAGATCTAAGCATAAGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3465#0 ----------------------------------AGAATCGGCACAGGGTTGTNTAATTC 26 consensus_3465#1 TATCCTAATTGTTTCTTTAAAAATACTGTTCTTCTGCTTCCCCGTCTCTGTTGCTAATTC 60 * ** * * ****** consensus_3465#0 TAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACT 86 consensus_3465#1 TAATATACGTACATTTGTTATACGACGATCCCCGAGACACCCCTGCCCCCATTGCTGACT 120 ************************************************************ consensus_3465#0 GTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCA 146 consensus_3465#1 GTTAGTAATCTTTGATTTTGGAGGAACGTTTTGTCAGATTTTGTCTAGGGTCGTGCAGCA 180 ************************************************************ consensus_3465#0 GCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAA 206 consensus_3465#1 GCATCAAAATACAAGGAAAGAGCCTTCAACAAATGTGTAGCTGTTCCAGGCACAGGAAAA 240 ************************************************************ consensus_3465#0 TGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAAC 266 consensus_3465#1 TGTATGTTACTTTAACTAATTTACCTATAAGCTTGCTAATGTGTAAGTGTATAAGCAAAC 300 ************************************************************ consensus_3465#0 AAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGAC 326 consensus_3465#1 AAAAAACAGAAACGTAACAATATTAAACTCACACACTTGGAGTACCCCTAGGAGCGCGAC 360 ************************************************************ consensus_3465#0 CTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGT 386 consensus_3465#1 CTTGTTGTTATACGGTCAGTGGGTACGCTACATAGTTGCTGTAATGTTATCCCATCTGGT 420 ************************************************************ consensus_3465#0 AAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAA 446 consensus_3465#1 AAAATCCGTTTAAGTTAAAGGCAGCTAGCGAATTGGGTGAGGGTTAAGACTAAAAAGGAA 480 ************************************************************ consensus_3465#0 GACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTAT 506 consensus_3465#1 GACAGTCTTACGGTGCAGTAGACGTTACGTTAGCGCTCGAACAAATCGAAAGAAGACTAT 540 ************************************************************ consensus_3465#0 TGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAA 566 consensus_3465#1 TGGGTTAGACACAGTATAGTTTGTCAGGTTTTTACAAGTAAAATGTCCTCGTAACAGCAA 600 ************************************************************ consensus_3465#0 TAAACTGGGAAGCGATTATGATTTACGTACTTATGGGAGAATCAATCCGCTTTACTTTTC 626 consensus_3465#1 TAAACTGGGAAGCGATTATGATTTACGTA-TTATGGGAGAATCAATCCGCTTTACTTTTC 659 ***************************** ****************************** consensus_3465#0 TTCTTATTCGTTACATCGTCCAGCAAACAGGAAAATTGACTTTTAAATCAACCATCCGGT 686 consensus_3465#1 TTCTTATTCGTTACATCGTCCAGCAGACAGGAAA-TTGACTTTTAAATCAAC-ATCCGGT 717 ************************* ******** ***************** ******* consensus_3465#0 TGCGAACAACCTCAATTCACCTCATTATCCACGCTGCTCCTCGTAA-CTCCTTCGTAACT 745 consensus_3465#1 T-CGAACAAC-TCAATTCAC-TCATTATTCACGCTGCTCCTCGTAAACTCCTTCGTA--C 772 * ******** ********* ******* ***************** ********** consensus_3465#0 TNCAGTTACAAATGAATCGGTGAACCCTGACAAAACGGTTAGTTTAAAGATCTAAGCATA 805 consensus_3465#1 TTGAGTTA-AAATGA--TCGTGAACC-TGACAAACGTTTTAGTTTAAAGATCTAAGCATA 828 * ***** ****** ******* ******* ********************** consensus_3465#0 AGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAGAAAGGAATATAGACC 865 consensus_3465#1 AGAAGAAGAAGTATCGCTTTGAATTGAGCTATTGCGAAAAAAAAAAAAAAAAAAAAAAAA 888 ******************************************** *** ** * * * consensus_3465#0 TTAAGACGAGATGAACAAATCACGCGGAAATGGACAGGAAT 906 consensus_3465#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||